skimming implementation

.github/workflows/build_linux.yml

@@ -0,0 +1,48 @@
+name: Build and upload Linux Python Package
+
+on:  [pull_request, release]
+
+jobs:
+  deploy:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python 3.7
+      uses: actions/setup-python@v1
+      with:
+        python-version: 3.7
+    - name: Install packages
+      run: |
+        python -m pip install setuptools --upgrade
+        python -m pip install pytest wheel
+        python -m pip install -r requirements.txt
+        python -m pip install -r requirements_dev.txt
+        python -m pip install --upgrade cffi twine
+
+    - name: Build manylinux Python wheels
+      uses: RalfG/python-wheels-manylinux-build@v0.3.3-manylinux2014_x86_64
+      with:
+        python-versions: 'cp37-cp37m cp38-cp38 cp39-cp39'
+        build-requirements: 'setuptools numpy pandas partridge psutil future configparser openmatrix'
+        pip-wheel-args: '--no-deps'
+
+    - name: Moves wheels
+      run: |
+        mkdir -p dist
+        cp -v ./*-manylinux*.whl dist/
+
+    - name: Keep wheels on GitHub
+#      if: ${{ github.event_name == 'push'}}
+      uses: actions/upload-artifact@v2
+      with:
+        name: library
+        path: dist/*.whl
+        if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn`
+#
+#    - name: Publish wheels to PyPI
+#      if: ${{ github.event_name == 'release'}}
+#      env:
+#        TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
+#        TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
+#      run: |
+#        twine upload dist/*-manylinux*.whl

.github/workflows/build_mac.yml

@@ -0,0 +1,50 @@
+name: Build and upload MacOS Python Package
+
+on:  [pull_request, release]
+
+jobs:
+  deploy:
+    runs-on:  macos-latest
+    strategy:
+      matrix:
+        python-version: ['3.7', '3.8']
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set Python environment
+      uses: actions/setup-python@v1
+      with:
+        python-version: ${{ matrix.python-version }}
+        architecture: x64
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install -r requirements.txt
+        pip install -r requirements_dev.txt
+        pip install setuptools wheel twine
+
+    - name: Build
+      run: |
+        python setup.py sdist bdist_wheel
+
+    - name: Keep wheels on GitHub
+#      if: ${{ github.event_name == 'push'}}
+      uses: actions/upload-artifact@v2
+      with:
+        name: library
+        path: dist/*.whl
+        if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn`
+
+    - name: Publish
+      if: ${{ github.event_name == 'release'}}
+      env:
+        TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
+        TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
+      run: |
+        twine upload dist/*.whl
+
+    - name: Publish tar files
+      if: ${{ github.event_name == 'release' && matrix.python-version == '3.8'}}
+      env:
+        TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
+        TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
+      run: twine upload dist/*.gz

.github/workflows/build_windows.yml

@@ -0,0 +1,49 @@
+name: Build and upload Windows Python Package
+
+on:  [pull_request, release]
+
+jobs:
+  deploy:
+    runs-on: windows-latest
+    strategy:
+      matrix:
+        python-version: ['3.7', '3.8']
+        architecture: ['x64']
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set Python environment
+      uses: actions/setup-python@v1
+      with:
+        python-version: ${{ matrix.python-version }}
+        architecture: ${{ matrix.architecture }}
+
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install setuptools wheel twine
+        pip install -r requirements.txt
+        pip install -r requirements_dev.txt
+        pip install pytest
+
+    - name: Compile library
+      run: |
+        pip install -e .
+
+    - name: Build
+      run: python setup.py sdist bdist_wheel
+
+
+    - name: Keep wheels on GitHub
+#      if: ${{ github.event_name == 'push'}}
+      uses: actions/upload-artifact@v2
+      with:
+        name: library
+        path: dist/*.whl
+        if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn`
+
+    - name: Publish
+      if: ${{ github.event_name == 'release'}}
+      env:
+        TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
+        TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
+      run: twine upload dist/*.whl

.github/workflows/documentation.yml

@@ -0,0 +1,49 @@
+name: Documentation
+
+on:  [pull_request, release]
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    strategy:
+      max-parallel: 1
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python 3.8
+      uses: actions/setup-python@v1
+      with:
+        python-version: 3.8
+    - name: Install dependencies
+      run: |
+        sudo apt-get install doxygen
+        python -m pip install setuptools --upgrade
+        python -m pip install pytest wheel
+        python -m pip install -r requirements.txt
+        python -m pip install -r requirements_dev.txt
+        python -m pip install --upgrade cffi twine
+
+    - name: Compile library
+      run: |
+        pip install -e .
+
+    - name: Builds documentation
+      run: |
+        cd doc
+        doxygen doxygen.conf
+        ls
+        sphinx-build -b html source build
+
+    - name: Keeps documentation on GitHub
+      uses: actions/upload-artifact@v2
+      with:
+        name: documentation
+        path: doc/build/
+        if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn`
+
+# YOU CAN UNCOMMENT THE SECTION BELOW TO DEPLOY THE DOCUMENTATION TO THE PAGES BRANCH
+#    - name: Deploy 🚀
+##      if: ${{ github.event_name == 'release'}}
+#      uses: JamesIves/github-pages-deploy-action@4.1.4
+#      with:
+#        branch: gh-pages # The branch the action should deploy to.
+#        folder: doc/build # The folder the action should deploy.

.github/workflows/test_linux_with_coverage.yml

@@ -0,0 +1,42 @@
+name: Test Linux
+
+on: [pull_request]
+#  pull_request:
+#    types: [ready_for_review, merge]
+
+jobs:
+  testing:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ['3.7', '3.8', '3.9']
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set Python environment
+      uses: actions/setup-python@v1
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        pip3 install setuptools --upgrade
+        pip3 install pytest wheel
+        pip3 install -r requirements.txt
+        pip3 install -r requirements_dev.txt
+    - name: Compile library
+      run: |
+        pip install -e .
+    - name: Runs tests
+      run: |
+        py.test
+#    - name: Generate coverage report
+#      run: |
+#        python3 -m pytest --cov=./ --cov-report=xml
+#    - name: Upload coverage to Codecov
+#      uses: codecov/codecov-action@v1
+#      with:
+#        token: ${{ secrets.CODECOV_TOKEN }}
+#        file: ./coverage.xml
+#        flags: unittests
+#        name: codecov-umbrella
+#        yml: ./codecov.yml
+#        fail_ci_if_error: true

.github/workflows/test_windows.yml

@@ -0,0 +1,55 @@
+name: Tests on Windows
+
+on: [pull_request]
+
+jobs:
+#  linting:
+#    runs-on: windows-latest
+#    steps:
+#      - uses: actions/checkout@v2
+#      - name: Set Python environment
+#        uses: actions/setup-python@v1
+#        with:
+#          python-version: 3.7
+#          architecture: x64
+#
+#      - name: Install dependencies
+#        run: |
+#          python -m pip install --upgrade pip
+#          pip install setuptools wheel
+#          pip install -r requirements.txt
+#          pip install flake8
+#
+#      - name: Lint with flake8
+#        run: |
+#          pip install
+#          flake8
+  testing:
+#    needs: linting
+    runs-on: windows-latest
+    strategy:
+      matrix:
+        python-version: ['3.7', '3.8']
+        architecture: ['x64']
+      max-parallel: 20
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set Python environment
+      uses: actions/setup-python@v1
+      with:
+        python-version: ${{ matrix.python-version }}
+        architecture: ${{ matrix.architecture }}
+
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install setuptools wheel
+        pip install -r requirements.txt
+        pip install -r requirements_dev.txt
+        pip install pytest
+
+
+    - name: Compile library and run tests
+      run: |
+        pip install -e .
+        py.test

.travis.yml

@@ -8,8 +8,12 @@ install:
   - sudo apt-get update
   - pip install -r requirements.txt
   - pip install .
-  - pip install sphinx numpydoc sphinx_rtd_theme breathe;
-  - sudo apt-get install doxygen
+  - if [ "$TRAVIS_BRANCH" == "master" ] && [ $TRAVIS_PYTHON_VERSION == 2.6 ];
+    then pip install sphinx numpydoc sphinx_rtd_theme breathe;
+    fi
+  - if [ "$TRAVIS_BRANCH" == "master" ] && [ $TRAVIS_PYTHON_VERSION == 2.6 ];
+    then sudo apt-get install doxygen;
+    fi
 
 script:
   - if [ "$TRAVIS_BRANCH" == "master" ] | [ "$TRAVIS_BRANCH" == "develop" ];
@@ -18,7 +22,7 @@ script:
     fi
 
 after_success:
-  - if [ "$TRAVIS_BRANCH" == "master" ] | [ "$TRAVIS_BRANCH" == "develop" ];
+  - if [ "$TRAVIS_BRANCH" == "master" ] && [ $TRAVIS_PYTHON_VERSION == 2.6 ];
     then sh bin/travis-update-documentation.sh;
     fi
 

CHANGES.md

@@ -1,5 +1,25 @@
 ## Changelog
 
+# 1.0b2
+
+ * Reduce copies of data to downsize memory needs  
+ * Updates tests  
+ * Adds a learning variable for iterations to remove jumpiness  
+ * Exit labeling loop if find a negative cost  
+ * Re-implements Utility scaling for labeling to avoid negative costs  
+ * Python 3 compliant and backward compatible to 2.6 using future  
+ * Add compiler flags and adjust some code so that it works with modern CPP  
+ * Update TRAVIS and add auto creation and deployment of documentation at end of successful tests  
+ * Move majority of documentation to sphinx-based github site  
+
+# 1.0b1
+
+ * Test scenarios: new scenarios, re-organization, and notebooks to view  
+ * Flexible preferred departure and arrival times with
+ * Ability to add functional forms to variables  
+ * Add updateStopStatesForTrips
+
+# Alpha
 Major changes to fast-trips since the original FAST-TrIPs (https://github.com/MetropolitanTransportationCommission/FAST-TrIPs-1)
 
 To be filled in further but including: