The package provides some basic functionality of the original SUIT toolbox for Matlab (https://github.com/jdiedrichsen/suit). Currently, only mapping of volume data to the flatmap and display of the flatmap are implemented.
- SUIT website: http://diedrichsenlab.org/imaging/suit.htm
- Official source code repository: https://github.com/SUITPy/
- HTML documentation (latest release): https://suitpy.readthedocs.io/
The required dependencies to use the software are:
- python >= 3.10,
- setuptools
- numpy >= 1.22.0
- nibabel >= 3.2.1
- pandas >= 2.0.0
- matplotlib >= 3.5.0
- plotly >= 5.10.0
- scipy >= 1.9.0
- neuroimagingtools >= 1.1.1
- antspyx >= 0.6.1
First make sure you have installed all the dependencies listed above. Then you can install SUITPy by running the following command in a command prompt:
pip install -U --user SUITPy
More detailed instructions are available at https://suitpy.readthedocs.io/en/latest/install.html
The Python version of the SUIT toolbox has been developed by the Diedrichsenlab including J. Diedrichsen, M. King, D. Zhi, C. Hernandez-Castillo, S. Witt and others. It is distributed under MIT License, meaning that it can be freely used and re-used, as long as proper attribution in form of acknowledgments and links (for online use) or citations (in publications) are given. The relevant references are:
SUIT normalisation and template:
- Diedrichsen, J. (2006). A spatially unbiased atlas template of the human cerebellum. Neuroimage. 33(1), 127-138. doi: 10.1016/j.neuroimage.2006.05.056
Surface-based representation and flatmap
- Diedrichsen, J. & Zotow, E. (2015). Surface-based display of volume-averaged cerebellar data. PLOSOne. doi: 10.1371/journal.pone.0133402