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Remove redundant CLEM workflow components#762

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tieneupin merged 11 commits intomainfrom
trim-clem-workflows
Mar 20, 2026
Merged

Remove redundant CLEM workflow components#762
tieneupin merged 11 commits intomainfrom
trim-clem-workflows

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@tieneupin
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Now that the CLEM workflow has been running for a substantial amount of time, we've identified that certain components introduced as part of the initial setup are unnecessary. This PR removes those excess components from the repository.

  • Removed LIF, TIFF, image stack and metadata tables from the Murfey database
  • Removed functions and logic blocks related to their registration
  • Refactored the CLEMImageSeries table into a more general purpose ImagingSite table, which can be used for multiple workflows

@tieneupin tieneupin self-assigned this Mar 19, 2026
@tieneupin tieneupin added server Relates to the server component client Relates to the client component cryo-clem Part of the cryo-CLEM pipeline extension labels Mar 19, 2026
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codecov bot commented Mar 19, 2026

Codecov Report

❌ Patch coverage is 89.33333% with 8 lines in your changes missing coverage. Please review.
✅ Project coverage is 49.46%. Comparing base (9975f24) to head (e92995a).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #762      +/-   ##
==========================================
+ Coverage   48.85%   49.46%   +0.61%     
==========================================
  Files          93       92       -1     
  Lines       10182     9793     -389     
  Branches     1324     1283      -41     
==========================================
- Hits         4974     4844     -130     
+ Misses       4960     4709     -251     
+ Partials      248      240       -8     
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@tieneupin tieneupin merged commit cd967b5 into main Mar 20, 2026
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@tieneupin tieneupin deleted the trim-clem-workflows branch March 20, 2026 09:41
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client Relates to the client component cryo-clem Part of the cryo-CLEM pipeline extension server Relates to the server component

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2 participants