Register CLEM data in ISPyB

[tieneupin]

Adds logic to register incoming CLEM data to both ISPyB and its mirror tables on Murfey.

• Adds new columns to the CLEMImageSeries table to keep track of image metadata needed for the ISPyB insert
• Adds logic to create a data collection group entry for CLEM data in ISPyB
• Adds logic to register grid overview datasets as atlases in ISPyB
• Adds logic to register positional datasets as grid squares in ISPyB
• Migrates hard-coded image scaling logic in some of the ISPyB insertion functions into the workflows that scale them as such, allowing the insertion function to be more universally used

[codecov]

Codecov Report

❌ Patch coverage is 71.20419% with 55 lines in your changes missing coverage. Please review.
✅ Project coverage is 38.24%. Comparing base (f91762e) to head (3abe4f6).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #689      +/-   ##
==========================================
+ Coverage   36.94%   38.24%   +1.29%     
==========================================
  Files          97       97              
  Lines       11459    11593     +134     
  Branches     1510     1528      +18     
==========================================
+ Hits         4234     4434     +200     
+ Misses       7063     6964      -99     
- Partials      162      195      +33     

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[stephen-riggs]

All seems fine, as long as you're happy it works

[stephen-riggs]

Do you need the units in the database? I can't see they are used anywhere

[tieneupin]

That's a valid point. I included it as a just-in-case, so I'll revisit this in the future if no new workflows end up using this column.