DT-2519: Patch API for selected study fields

[rushtong]

Addresses

https://broadworkbench.atlassian.net/browse/DT-2519

Summary

This PATCH API allows for admins, chairs, and data submitters to patch a set of selected values on a study. The top level field values patchable are:

• Study name
• Study description
• Study datatypes (list of strings)
• Study PI Name
• Study public visibility (boolean)

Additionally, these study properties can be modified:

• Study Type (enum that must match a value in the current schema)
• Phenotype Indication
• Data Custodian Email (this replicates and makes redundant PUT /api/dataset/study/{studyId}/custodians)
• Target Delivery Date
• Target Public Release Date

Reviewer Notes

• I chose to use Jackson to strictly validate the input json because similar configuration functionality is missing from Gson.
• The current UI shows the two target dates as unrelated to alternative data file sharing plan, but the fields are saved as alternativeDataSharingPlanTargetDeliveryDate and alternativeDataSharingPlanTargetPublicReleaseDate:

---

Have you read CONTRIBUTING.md lately? If not, do that first.

• Label PR with a Jira ticket number and include a link to the ticket
• Label PR with a security risk modifier [no, low, medium, high]
• PR describes scope of changes
• Get a minimum of one thumbs worth of review, preferably two if enough team members are available
• Get PO sign-off for all non-trivial UI or workflow changes
• Verify all tests go green
• Test this change deployed correctly and works on dev environment after deployment

[otchet-broad]

Nice!

Left one thought about the OpenAPI docs that is implementer's choice. Everything else looks good!
Thank you!

[sonarqubecloud]

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
93.7% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarQube Cloud