Replace setup.py with pyproject

.github/workflows/tests.yaml

@@ -42,8 +42,7 @@ jobs:
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
-          python -m pip install setuptools>=40.8.0 wheel pytest
-          python -m pip install .
+          python -m pip install -e .[dev]
           python -m pip freeze --all
 
       - name: Validate OpenCL

README.md

@@ -3,7 +3,7 @@
 
 <p align="center"><i>Monte Carlo simulations of light transport made easy.</i></p>
 <p align="center">
-<img src="./docs/README.assets/pytissue-demo-banenr.jpg">
+<img src="https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/main/docs/README.assets/pytissue-demo-banenr.jpg" />
 </p>
 
 This python package is an object-oriented implementation of Monte Carlo modeling for light transport in diffuse media. 
@@ -30,7 +30,14 @@ As discussed in the [why use this package](#why-use-this-package) section, compu
 - [Examples](#examples)
 
 ## Installation
-Requires Python 3.6+ installed on the device.
+Requires Python >=3.9 installed on the device.
+
+### Installing the latest release
+> Currently, this `pip` version is outdated. We recommend installing the development version.
+```shell
+python -m pip install --upgrade pip
+python -m pip install --upgrade pytissueoptics
+```
 
 ### Installing the development version
 1. Clone the repository.
@@ -39,14 +46,7 @@ Requires Python 3.6+ installed on the device.
     - On MacOS/Linux: `source venv/bin/activate`.
     - On Windows: `venv\Scripts\activate.bat`.
 4. Upgrade `pip` with `pip install --upgrade pip`.
-5. Install the package requirements with `pip install -r requirements.txt`.
-
-### Installing the previous release
-> Currently, this `pip` version is outdated. We recommend installing the development version.
-```shell
-pip install --upgrade pip
-pip install --upgrade pytissueoptics
-```
+5. Install the package requirements with `python -m pip install -e .[dev]`.
 
 ## Getting started
 A command-line interface is available to help you run examples and tests.

pyproject.toml

@@ -0,0 +1,66 @@
+[build-system]
+requires = ["setuptools>=77.0","setuptools_scm>=7"]
+build-backend = "setuptools.build_meta"
+
+[project.urls]
+GitHub = "https://github.com/DCC-Lab/PyTissueOptics"
+
+[project]
+name = "pytissueoptics"
+description = "Python module for 3D Monte Carlo Simulation of Light Propagation"
+readme = "README.md"
+authors = [
+  { name = "Ludovick Begin", email = "ludovick.begin@gmail.com" },
+  { name = "Marc-Andre Vigneault", email = "marc-andre.vigneault.2@ulaval.ca" },
+  { name = "Daniel Cote", email = "dccote@cervo.ulaval.ca" }
+]
+license = "MIT"
+license-files = ["LICENSE"]
+requires-python = ">=3.9"
+dynamic = ["version"]
+dependencies = [
+  "numpy>=2.0.0",
+  "matplotlib",
+  "tqdm",
+  "psutil",
+  "configobj",
+  "Pygments",
+  "siphash24; python_version < '3.13'",
+  "pyopencl",
+  "vtk>=9.4",
+  "mayavi-dev",
+  "pyqt5",
+]
+
+[project.optional-dependencies]
+dev = [
+  "mockito",
+  "coverage",
+  "pytest",
+  "ruff",
+]
+
+[tool.setuptools]
+packages = ["pytissueoptics"]
+
+[tool.setuptools.package-data]
+"pytissueoptics" = ["rayscattering/opencl/src/*.c", "**/*.obj", "examples/*.py"]
+
+[tool.setuptools_scm]
+version_scheme = "guess-next-dev"
+local_scheme = "node-and-date"
+
+[tool.pytest.ini_options]
+testpaths = ["pytissueoptics"]
+python_files = ["test*.py"]
+
+[tool.ruff]
+line-length = 120
+target-version = "py39"
+
+[tool.ruff.lint]
+select = ["ALL"]
+
+[tool.ruff.format]
+quote-style = "double"
+indent-style = "space"

pytissueoptics/__init__.py

@@ -1,5 +1,5 @@
 from .scene import *
 from .rayscattering import *
+from importlib.metadata import version
 
-
-__version__ = "2.0.0b1"
+__version__ = version("pytissueoptics")