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dataset: avima #15

JasperVanDenBosch wants to merge 34 commits into from

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@JasperVanDenBosch JasperVanDenBosch commented Aug 1, 2019 •
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  • must overwrite pre-existing object
  • store epoch files
  • epochs name could be epo
  • add sbatch to repo
  • adapt epoching params
  • deal with splitting
  • suppress or shorten file repr in log (Storing object in memory store as.. etc)
  • suppress deprecationwarnings (make issues)
  • downsample
  • plot psd before and after filter
  • ICA
  • ICA plot
  • raw plot
  • butterfly plot
  • report
  • verbosity
  • log to file
  • memory can find out about object size using mne. sizeof_fmt(self._size)
  • memory gives log event on any object added or removed to print current size.

JasperVanDenBosch and others added 30 commits August 1, 2019 18:15
@JasperVanDenBosch
removed version spec for mne in requirements
25854fe
@JasperVanDenBosch
Merge branch 'master' into dataset-avima
b97e92e
@JasperVanDenBosch
in the process of splitting off preproc of one file
e4a1923
@JasperVanDenBosch
working on basics
459ea14
@JasperVanDenBosch
some reorganizing
9c4e329
@JasperVanDenBosch
simplified eegprep
495f060
@JasperVanDenBosch
fixed output filename
774ba5c
@JasperVanDenBosch
changed output file naming
61b5ab9
@JasperVanDenBosch
introduced arg parser
da492db
@JasperVanDenBosch
updated readme
9f99c1a
@JasperVanDenBosch
fixed versions of mne and autoreject
0a48610
@JasperVanDenBosch
main.run() collects args
07b851f
@JasperVanDenBosch
Merge branch 'master' into dataset-avima
0f42b5a
@JasperVanDenBosch
simplified Singularity recipe
58400a5
@JasperVanDenBosch
notes on i/o approach
03e3746
@JasperVanDenBosch
building new pipeline-based approach
b171235
@JasperVanDenBosch
can run whole dataset
490b5a8
@JasperVanDenBosch
worked out SubjectJob
8513c5c
@JasperVanDenBosch
introduced Log
eeb2a87
@JasperVanDenBosch
implemented log.received_arguments()
7218817
@JasperVanDenBosch
created new jobs for one run
719c1ba
@JasperVanDenBosch
InputOutput can provide a sub-scope
c6ce51c
@JasperVanDenBosch
cleaned up basic jobs
6f62994
@JasperVanDenBosch
implemented io.get_filepath()
40edeae
@JasperVanDenBosch
implemented a key/value memory storage
3603d80
@JasperVanDenBosch
fixed input/output issues
1aa73fc
@JasperVanDenBosch
io will overwrite existing object
0c9ae8d
@JasperVanDenBosch
parent jobs can cleanup children in cleanup phase
5295ef9
@JasperVanDenBosch
writing epochs to file
9f0eff1
@JasperVanDenBosch
fixed frozenset.name bug
244c4fb
@JasperVanDenBosch
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JasperVanDenBosch commented Jan 8, 2020

numpy.core._exceptions.MemoryError: Unable to allocate array with shape (6300, 128, 3380) and data type float64

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@JasperVanDenBosch