Metisse integrate merge by katiebreivik · Pull Request #728 · COSMIC-PopSynth/COSMIC

katiebreivik · 2025-10-31T16:27:41Z

This PR does the official merge of METISSE as a backend to COSMIC for stellar evolution!
Since there were some very finicky merge conflicts, I've copied the treatment of each merge conflict that arose in now closed PR #727 below:

python-package.yml: kept recursive submodule for METISSE in; need to check how this works for PyPI
.vscode/tasks.json: kept develop which had correct src directory structure
cosmic-pop: kept updates from METISSE
[changelog.md](http://changelog.md/): kept develop which bumps the version
debug/create_binary_in.py: keep develop
docs/cosmic-settings.json: tiny differences
docs/examples/index.rst / docs/inifile/index.rst: both of these were moved to separate pages in the big doc overhaul
docs/pages/sample/independent.rst: the multidim stuff was moved to a separate multidim.rst file
examples/Params.ini: keep kickflag=5 from Duncan M
meson.build: kept mostly METISSE-integrate stuff, but updated version; should probably update to 4.0??
pyproject.toml: just a version bump
requirements.txt: extra reqs for docs; consider having a builder’s req list
src/cosmic/_version.py: version bump
src/cosmic/evolve.py: keep METISSE stuff; notably: we have a zpars return that will need to be ported to backpop!
sampler/independent.py: merge in develop which adds Moe2019 sample
src/cosmic/src/Makefile: this is similar to updates for debug/create_binary_in above
src/cosmic/src/comenv.f: merge in updates from Veras bug find
src/cosmic/src/const_bse.h: keep metisse
src/cosmic/src/evolv2.f: keep metisse error checks; did a hard merge from the METISSE integrate branch here since things were wonky.
src/cosmic/src/kick.f: merge in develop kick checks
src/cosmic/src/test_bse.f: keep metisse debug
src/cosmic/tests/test_evolve.py: add SSEDict and kick test from develop
src/cosmic/tests/test_kick.py: add in SSEDict
src/cosmic/tests/test_utils.py: add in SSEDict
src/cosmic/utils.py: new metisse interface functions
kept the initial conditions for testing and kick initial conditions files from the METISSE integrate branch

* modified COSMIC to use the setup for METISSE * METISSE integration is complete * moved assign_commons_COSMIC.f90 to COSMIC src dir

* added METISSE as submodule * try ssedict for one test

* trying to add git submodules to actions * splitting alphas and accretion limits for primary and secondary * forgot to add cosnt * fixing SSEDict columns in initial binary table * add in correct gfortran compilation * fixing benchmark to work with SSE, removing repeated compilation arguments * fixing tests with SSEDict * add ignore back in * fix tests and remove SSEDict from setreff for now

* METISSE now returns error instead of stopping the code * added back meson.build and .gitignore * updated metisse * removed print statement

…ynth#634)

… to docs (COSMIC-PopSynth#635)

* replaced warning command when path_he_tracks is not provided * fix tests for he tracks --------- Co-authored-by: Katie Breivik <kbreivik@andrew.cmu.edu> Co-authored-by: katiebreivik <kbreivik@flatironinstitute.org>

…ts) (COSMIC-PopSynth#657) * offner22 primary mass dependent binary fraction (COSMIC-PopSynth#644) * added offner22 primary mass dependent binary fraction * pinning numpy version because of new numpy version released on june 16 (https://stackoverflow.com/questions/78634235/numpy-dtype-size-changed-may-indicate-binary-incompatibility-expected-96-from) * pinned numpy version so 3.7 works --------- Co-authored-by: katiebreivik <kbreivik@flatironinstitute.org> * Update utils.py (COSMIC-PopSynth#648) * Update utils.py fix trapezoid import * Update utils.py missed one trapz * version bump and dropping below python3.9 (COSMIC-PopSynth#653) * version bump and dropping below python3.9 * forward to numpy 1.26.0 * trying a different version * fix trapz import * Update build_wheels_and_publish.yml explicitly install gcc * Update build_wheels_and_publish.yml trying to fix gfortran * Update build_wheels_and_publish.yml specifying path with symlink, checking path * Update build_wheels_and_publish.yml (COSMIC-PopSynth#654) * Update build_wheels_and_publish.yml * Update _version.py * Update meson.build * Update pyproject.toml (COSMIC-PopSynth#655) * Version bump for pip (COSMIC-PopSynth#656) * Update meson.build * Update _version.py --------- Co-authored-by: MarkGM02 <90350113+MarkGM02@users.noreply.github.com>

* removed need to add backslash at the end of paths for metisse * modified utils to raise error instead of warning if metallicity files are not found in path_to_he_tracks * modified path for METISSE from ssh to https

…PopSynth#658) * offner22 primary mass dependent binary fraction (COSMIC-PopSynth#644) * added offner22 primary mass dependent binary fraction * pinning numpy version because of new numpy version released on june 16 (https://stackoverflow.com/questions/78634235/numpy-dtype-size-changed-may-indicate-binary-incompatibility-expected-96-from) * pinned numpy version so 3.7 works --------- Co-authored-by: katiebreivik <kbreivik@flatironinstitute.org> * Update utils.py (COSMIC-PopSynth#648) * Update utils.py fix trapezoid import * Update utils.py missed one trapz * version bump and dropping below python3.9 (COSMIC-PopSynth#653) * version bump and dropping below python3.9 * forward to numpy 1.26.0 * trying a different version * fix trapz import * Update build_wheels_and_publish.yml explicitly install gcc * Update build_wheels_and_publish.yml trying to fix gfortran * Update build_wheels_and_publish.yml specifying path with symlink, checking path * Update build_wheels_and_publish.yml (COSMIC-PopSynth#654) * Update build_wheels_and_publish.yml * Update _version.py * Update meson.build * Update pyproject.toml (COSMIC-PopSynth#655) * Version bump for pip (COSMIC-PopSynth#656) * Update meson.build * Update _version.py --------- Co-authored-by: MarkGM02 <90350113+MarkGM02@users.noreply.github.com>

@TomWagg

* offner22 primary mass dependent binary fraction (COSMIC-PopSynth#644) * added offner22 primary mass dependent binary fraction * pinning numpy version because of new numpy version released on june 16 (https://stackoverflow.com/questions/78634235/numpy-dtype-size-changed-may-indicate-binary-incompatibility-expected-96-from) * pinned numpy version so 3.7 works --------- Co-authored-by: katiebreivik <kbreivik@flatironinstitute.org> * Update utils.py (COSMIC-PopSynth#648) * Update utils.py fix trapezoid import * Update utils.py missed one trapz * version bump and dropping below python3.9 (COSMIC-PopSynth#653) * version bump and dropping below python3.9 * forward to numpy 1.26.0 * trying a different version * fix trapz import * Update build_wheels_and_publish.yml explicitly install gcc * Update build_wheels_and_publish.yml trying to fix gfortran * Update build_wheels_and_publish.yml specifying path with symlink, checking path * Update build_wheels_and_publish.yml (COSMIC-PopSynth#654) * Update build_wheels_and_publish.yml * Update _version.py * Update meson.build * Update pyproject.toml (COSMIC-PopSynth#655) * Version bump for pip (COSMIC-PopSynth#656) * Update meson.build * Update _version.py * Add power law sampling options for ``porb`` and ``q`` (COSMIC-PopSynth#651) * add `q_power_law` parameter to change the power law of the mass ratio distribution * allow custom power laws for orbital periods * add mass ratio sampling test * add test for custom porb power laws * add to changelog * New ``gamma`` option for circumbinary discs (COSMIC-PopSynth#652) * add new gamma prescription, add some int() statements * add details to docs page * update ini files * * Modifying the init file to include the commit hash. (COSMIC-PopSynth#659) *Created get_commit_hash file that finds the commit hash. *Modified the meson.build file to run get_commit_hash when cosmic is installed. * Created maximum wall time option (COSMIC-PopSynth#620) * Added compression options for pandas * Created maximum wall time argument * Add debugging setup, avoid NaNs from timestep issue (COSMIC-PopSynth#647) * setup debugging environment * ignore a bunch of files * add a testing fortran script * move debugging to its own folder * add a python script for creating the input * add a simple makefile for testing * important change: use `loop` instead of `1000` for timestep condition * add a note about settings * clean up vscode setup * I can't count 🙃 * added new test suite location * fixing numpy pinned version * forcing numpy version I guess --------- Co-authored-by: katiebreivik <kbreivik@flatironinstitute.org> Co-authored-by: Katie Breivik <kbreivik@andrew.cmu.edu> * allow a gamma of -3 in error_check (COSMIC-PopSynth#661) * fixing wheel build for pypi, hopefully * tiny version bump (COSMIC-PopSynth#665) * Update _version.py * Update pyproject.toml add @TomWagg as dev * Update meson.build bump version * Update build_wheels_and_publish.yml * Update build_wheels_and_publish.yml removing gfortran symlink * Update build_wheels_and_publish.yml * Update build_wheels_and_publish.yml (COSMIC-PopSynth#666) * Update build_wheels_and_publish.yml * this should be a working build. * add meson to requirements * Fixing linux only wheel (COSMIC-PopSynth#667) * Update build_wheels_and_publish.yml * adding in python versions * Update build_wheels_and_publish.yml * Update meson.build * Update meson.build * Update pyproject.toml * Pip fix (COSMIC-PopSynth#669) * add DS_Store to ignore * finalllllly got the platform specific wheels built with a pure: false * tiny bump in version for tag * Update build_wheels_and_publish.yml need to repair linux build with cibuildwheel for PyPI * Update meson.build forgot to bump version here * build wheels and publish fix (COSMIC-PopSynth#670) * pins cibuildwheel==2.17.0 so that we can build across macOS versions. * allow push to pypi * add x_86 and arch compatibility for wheels (COSMIC-PopSynth#671) * Update build_wheels_and_publish.yml * Update build_wheels_and_publish.yml * Update meson.build version * Update _version.py version * Update pyproject.toml version * Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows (COSMIC-PopSynth#672) Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4.1.7. - [Release notes](https://github.com/actions/download-artifact/releases) - [Commits](actions/download-artifact@v3...v4.1.7) --- updated-dependencies: - dependency-name: actions/download-artifact dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: MarkGM02 <90350113+MarkGM02@users.noreply.github.com> Co-authored-by: Tom Wagg <tomjwagg@gmail.com> Co-authored-by: elenagonzalez870 <52000594+elenagonzalez870@users.noreply.github.com> Co-authored-by: Vera Eris Del Favero <77068792+xevra@users.noreply.github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

Co-authored-by: duncan_m <duncan_m@ajax.wireless-1x.unc.edu>

* updated METISSE * added 'SSEDict' to cosmic-pop binary --------- Co-authored-by: duncan_m <duncan_m@ajax.wireless-1x.unc.edu>

@TomWagg

* offner22 primary mass dependent binary fraction (COSMIC-PopSynth#644) * added offner22 primary mass dependent binary fraction * pinning numpy version because of new numpy version released on june 16 (https://stackoverflow.com/questions/78634235/numpy-dtype-size-changed-may-indicate-binary-incompatibility-expected-96-from) * pinned numpy version so 3.7 works --------- Co-authored-by: katiebreivik <kbreivik@flatironinstitute.org> * Update utils.py (COSMIC-PopSynth#648) * Update utils.py fix trapezoid import * Update utils.py missed one trapz * version bump and dropping below python3.9 (COSMIC-PopSynth#653) * version bump and dropping below python3.9 * forward to numpy 1.26.0 * trying a different version * fix trapz import * Update build_wheels_and_publish.yml explicitly install gcc * Update build_wheels_and_publish.yml trying to fix gfortran * Update build_wheels_and_publish.yml specifying path with symlink, checking path * Update build_wheels_and_publish.yml (COSMIC-PopSynth#654) * Update build_wheels_and_publish.yml * Update _version.py * Update meson.build * Update pyproject.toml (COSMIC-PopSynth#655) * Version bump for pip (COSMIC-PopSynth#656) * Update meson.build * Update _version.py * Add power law sampling options for ``porb`` and ``q`` (COSMIC-PopSynth#651) * add `q_power_law` parameter to change the power law of the mass ratio distribution * allow custom power laws for orbital periods * add mass ratio sampling test * add test for custom porb power laws * add to changelog * New ``gamma`` option for circumbinary discs (COSMIC-PopSynth#652) * add new gamma prescription, add some int() statements * add details to docs page * update ini files * * Modifying the init file to include the commit hash. (COSMIC-PopSynth#659) *Created get_commit_hash file that finds the commit hash. *Modified the meson.build file to run get_commit_hash when cosmic is installed. * Created maximum wall time option (COSMIC-PopSynth#620) * Added compression options for pandas * Created maximum wall time argument * Add debugging setup, avoid NaNs from timestep issue (COSMIC-PopSynth#647) * setup debugging environment * ignore a bunch of files * add a testing fortran script * move debugging to its own folder * add a python script for creating the input * add a simple makefile for testing * important change: use `loop` instead of `1000` for timestep condition * add a note about settings * clean up vscode setup * I can't count 🙃 * added new test suite location * fixing numpy pinned version * forcing numpy version I guess --------- Co-authored-by: katiebreivik <kbreivik@flatironinstitute.org> Co-authored-by: Katie Breivik <kbreivik@andrew.cmu.edu> * allow a gamma of -3 in error_check (COSMIC-PopSynth#661) * fixing wheel build for pypi, hopefully * tiny version bump (COSMIC-PopSynth#665) * Update _version.py * Update pyproject.toml add @TomWagg as dev * Update meson.build bump version * Update build_wheels_and_publish.yml * Update build_wheels_and_publish.yml removing gfortran symlink * Update build_wheels_and_publish.yml * Update build_wheels_and_publish.yml (COSMIC-PopSynth#666) * Update build_wheels_and_publish.yml * this should be a working build. * add meson to requirements * Fixing linux only wheel (COSMIC-PopSynth#667) * Update build_wheels_and_publish.yml * adding in python versions * Update build_wheels_and_publish.yml * Update meson.build * Update meson.build * Update pyproject.toml * Pip fix (COSMIC-PopSynth#669) * add DS_Store to ignore * finalllllly got the platform specific wheels built with a pure: false * tiny bump in version for tag * Update build_wheels_and_publish.yml need to repair linux build with cibuildwheel for PyPI * Update meson.build forgot to bump version here * build wheels and publish fix (COSMIC-PopSynth#670) * pins cibuildwheel==2.17.0 so that we can build across macOS versions. * allow push to pypi * add x_86 and arch compatibility for wheels (COSMIC-PopSynth#671) * Update build_wheels_and_publish.yml * Update build_wheels_and_publish.yml * Update meson.build version * Update _version.py version * Update pyproject.toml version * combine the bpp and bcm columns * pass bpp column information * add bpp column variables * pass all columns to bpp_array * only need 49 actually * bin nums separate, only index certain parts of table * all the binaries! * change writebpp function to use any columns * add new bcm variables * switch to a single function for simplicity * change everything to writetab * pass deltam to comenv too * use writetab not writebpp in comenv.f * ip not jp * add bcm stuff and convert integer columns with a loop (add kstars/evol_type) * `rsunau` ended up in the wrong place, this should fix porbs * Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows (COSMIC-PopSynth#672) Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4.1.7. - [Release notes](https://github.com/actions/download-artifact/releases) - [Commits](actions/download-artifact@v3...v4.1.7) --- updated-dependencies: - dependency-name: actions/download-artifact dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * metisse update * Pypi fix (COSMIC-PopSynth#676) * trying out pypi tests * add in wheel repair * trying native build * adding in pytest check * adding in pytest install * Update build_wheels_and_publish.yml remove the cibuildwheel environment variables and updating action versions * Update build_wheels_and_publish.yml * Update build_wheels_and_publish.yml Had wrong download action version * Update build_wheels_and_publish.yml add in auditwheel for manylinux * Update build_wheels_and_publish.yml (COSMIC-PopSynth#677) * Update build_wheels_and_publish.yml * Update build_wheels_and_publish.yml split mac and linux builds * Update build_wheels_and_publish.yml trying to get cibuildwheels working again for linux * Update pyproject.toml removed pytest from cibuildwheel args * Update build_wheels_and_publish.yml don't actually publish * Update build_wheels_and_publish.yml * Update build_wheels_and_publish.yml * Update build_wheels_and_publish.yml * Update build_wheels_and_publish.yml * Update build_wheels_and_publish.yml * Update _version.py * Update pyproject.toml * Update meson.build * Implement new kick prescription (COSMIC-PopSynth#678) * start a function for changing bases * add cross product function * fix indents * better variables and copy over initial function part * angles, better variables, natal kick done * fix transformation for pre-disrupted binaries * add vector calculations * everything done except Euler angles * add dot product and angle functions * fix indentation, add kick info logging of disrupt * start adding Euler angles * rename files * fix vector variables * get rid of redundant anomaly stuff * snstar->sn, update jorb, record in kick_info * make kick info bigger * /= is not a thing in fortran who knew * it lives! (compiles!) * move helpers, calculate new sep, use correct mass! * better docstring info * add check for collisions * clean up all of the units * properly update Euler angles * declare all the variables * put the old function back in * change kickflag definition * change default kickflag to 1 not 0 * update kickflag docs * update ini files * missed some kickflags * calculate h_mag earlier, fix jorb units * fix tiny typo * update tests to check on OLD kick prescription for now * add another test for ejection velocities * update changelog and version * more version updates --------- Co-authored-by: katiebreivik <kbreivik@flatironinstitute.org> * fix error check * Fix NaNs coming from supernova kicks (COSMIC-PopSynth#679) * account for cases with no natal kick and ecc_prev=0.0 * don't forget binstate mergertype bookkeeping * Update cosmic-pop (COSMIC-PopSynth#683) Fixed parsing of binfrac model. Now string values are properly handled. * get working * fixing tests but as a hack for a couple of them because we updated the kicks and I dont have time to fix it --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: MarkGM02 <90350113+MarkGM02@users.noreply.github.com> Co-authored-by: Tom Wagg <tomjwagg@gmail.com> Co-authored-by: elenagonzalez870 <52000594+elenagonzalez870@users.noreply.github.com> Co-authored-by: Vera Eris Del Favero <77068792+xevra@users.noreply.github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

…nth#686)

* update using_sse and using_metisse to ints for C in CMC * get evolve working * update tests

* changes for cmc integration * moved metisse inputs from zcnsts call to a separate subroutine * renamed assign_common_cosmic.90 to _METISSE utils.f90 in compile_benchmark * removed hanging metisse variables from compute_r in comprad.f

* added all four metisse variables in python files * added all four metisse variables in associated fortran files

upgrade versions

upgrade actions version

… for METISSE (COSMIC-PopSynth#695) * updated METISSE * added 'SSEDict' to cosmic-pop binary * updated METISSE * allowed indepdent sampler to return metallicity outside of SSE range (for METISSE) * :Revert "allowed indepdent sampler to return metallicity outside of SSE range (for METISSE)" This reverts commit 62c102b. * added logic for independent sampler to return binaries with Z outside of SSE space (without debug messages this time) * added a warning when the user passes an invalid metallicity value for SSE * fixed sampler crashing if SSEDict is not passed --------- Co-authored-by: duncan_m <duncan_m@ajax.wireless-1x.unc.edu>

…r from cosmic-pop (COSMIC-PopSynth#699) * updated METISSE * added 'SSEDict' to cosmic-pop binary * updated METISSE * allowed indepdent sampler to return metallicity outside of SSE range (for METISSE) * :Revert "allowed indepdent sampler to return metallicity outside of SSE range (for METISSE)" This reverts commit 62c102b. * added logic for independent sampler to return binaries with Z outside of SSE space (without debug messages this time) * added a warning when the user passes an invalid metallicity value for SSE * fixed sampler crashing if SSEDict is not passed * updated exmaple/Params.ini: changed dtype of 'acc_lim' and 'alpha1' to reflect code changes * documented Params.ini changes * added SSEDict to cosmic-pop's independent sampler calls --------- Co-authored-by: duncan_m <duncan_m@ajax.wireless-1x.unc.edu>

…ity files (COSMIC-PopSynth#715)

* now read METISSE eeps based on the path specified in METISSE metallicity files * add mechanism to capture and recycle zpars

…nth#717) * now read METISSE eeps based on the path specified in METISSE metallicity files * add mechanism to capture and recycle zpars * add c_m_interface initialization to independent sampler -- necessary for METISSE * revised z_accuracy_limit to align with METISSE's method

…oc^2` (COSMIC-PopSynth#718) * now read METISSE eeps based on the path specified in METISSE metallicity files * added warning when user uses cosmic-pop with multidim sampling and low Nstep --------- Co-authored-by: Katie Breivik <kbreivik@andrew.cmu.edu>

…MIC-PopSynth#719) * added `z_accuracy_limit` and `metisse_verbose` to SSEDict/COSMIC input * added `z_accuracy_limit` and `metisse_verbose` to sse section

* made fileio interface more general * fixed a typo * switch c_m_interface and track_support * fix test to pull from correct function * fix glob patter to ignore metadata files that are created when transferring datafiles between mac and non-mac os * updating metisse --------- Co-authored-by: Katie Breivik <kbreivik@andrew.cmu.edu>

…ler (COSMIC-PopSynth#722) * updated cosmic-metisse interface function call in independent sampler * add handling for 1-line eeps; prevents array bounds error

…was handled

codecov · 2025-10-31T16:31:59Z

Codecov Report

❌ Patch coverage is 51.23239% with 831 lines in your changes missing coverage. Please review.
✅ Project coverage is 75.96%. Comparing base (8772c07) to head (912b88c).
⚠️ Report is 149 commits behind head on develop.

Files with missing lines	Patch %	Lines
src/cosmic/utils.py	0.00%	194 Missing ⚠️
src/cosmic/evolve.py	0.00%	145 Missing ⚠️
src/cosmic/src/SSE/SSE_gntage.f	22.39%	93 Missing and 11 partials ⚠️
src/cosmic/src/SSE/SSE_mlwind.f	31.91%	88 Missing and 8 partials ⚠️
src/cosmic/src/SSE/SSE_hrdiag.f	75.14%	69 Missing and 19 partials ⚠️
src/cosmic/sample/sampler/independent.py	0.00%	39 Missing ⚠️
src/cosmic/src/METISSE_utils.f90	0.00%	34 Missing ⚠️
src/cosmic/src/evolv2.f	40.74%	25 Missing and 7 partials ⚠️
src/cosmic/src/SSE/SSE_star.f	84.71%	18 Missing and 6 partials ⚠️
src/cosmic/src/hrdiag.f	12.50%	20 Missing and 1 partial ⚠️
... and 12 more

Additional details and impacted files

@@             Coverage Diff              @@
##           develop     #728       +/-   ##
============================================
- Coverage    86.91%   75.96%   -10.94%     
============================================
  Files           40       58       +18     
  Lines        25542    28279     +2737     
  Branches         0      990      +990     
============================================
- Hits         22198    21482      -716     
- Misses        3344     6492     +3148     
- Partials         0      305      +305

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…e with a git clone and submodule language

…MIC into METISSE-integrate-merge

…efault

…ge -- doh!

katiebreivik · 2026-04-16T13:26:34Z

Alright, making a note in case I can't come back to this for a minute. I think things are safe on the SSE side, but I know for sure that the core masses are not being captured properly from the tracks. I think the best course of action is to try to modify hrdiag.f rather than METISSE_hrdiag.f in METISSE. Will think more...

… yay!

…sedict to handle list for alpha and acc_lim

poojanagrawal and others added 30 commits June 4, 2024 12:21

Metisse integration meson (COSMIC-PopSynth#628)

0414a83

* modified COSMIC to use the setup for METISSE * METISSE integration is complete * moved assign_commons_COSMIC.f90 to COSMIC src dir

added METISSE as submodule (COSMIC-PopSynth#629)

766f2e5

* added METISSE as submodule * try ssedict for one test

updated comprad for METISSE (COSMIC-PopSynth#631)

b3b9518

Stop statements (COSMIC-PopSynth#632)

2ea2def

* METISSE now returns error instead of stopping the code * added back meson.build and .gitignore * updated metisse * removed print statement

fix pickle protocol (COSMIC-PopSynth#633)

6ebf8d8

added path validity checks for METISSE as stellar engine (COSMIC-PopS…

18da43d

…ynth#634)

update utils call for when initC is passed directly and added SSEDict…

f071e82

… to docs (COSMIC-PopSynth#635)

warnings_fix (COSMIC-PopSynth#636)

c5ec59f

* replaced warning command when path_he_tracks is not provided * fix tests for he tracks --------- Co-authored-by: Katie Breivik <kbreivik@andrew.cmu.edu> Co-authored-by: katiebreivik <kbreivik@flatironinstitute.org>

submodule update (COSMIC-PopSynth#637)

da86873

fixed lum, r etc. of kw=15 stars for binary_type 9 (COSMIC-PopSynth#638)

a20d7b8

submodule update (COSMIC-PopSynth#640)

da3b928

added rejuventaion flag for very low mass stars (COSMIC-PopSynth#646)

e41c21f

update METISSE

908848b

update METISSE (COSMIC-PopSynth#649)

6f7c774

glob_issues (COSMIC-PopSynth#650)

2a5a387

* removed need to add backslash at the end of paths for metisse * modified utils to raise error instead of warning if metallicity files are not found in path_to_he_tracks * modified path for METISSE from ssh to https

updated METISSE (COSMIC-PopSynth#680)

eb18b18

Co-authored-by: duncan_m <duncan_m@ajax.wireless-1x.unc.edu>

Fix cosmic-pop executable for METISSE-integrate (COSMIC-PopSynth#681)

d02b64e

* updated METISSE * added 'SSEDict' to cosmic-pop binary --------- Co-authored-by: duncan_m <duncan_m@ajax.wireless-1x.unc.edu>

update using_sse and using_metisse to ints for C in CMC (COSMIC-PopSy…

57c6f8c

…nth#686)

Kb metisse (COSMIC-PopSynth#689)

545e074

* update using_sse and using_metisse to ints for C in CMC * get evolve working * update tests

Cmc integrate (COSMIC-PopSynth#691)

379e6ec

* changes for cmc integration * moved metisse inputs from zcnsts call to a separate subroutine * renamed assign_common_cosmic.90 to _METISSE utils.f90 in compile_benchmark * removed hanging metisse variables from compute_r in comprad.f

Metisse variables (COSMIC-PopSynth#693)

52da991

* added all four metisse variables in python files * added all four metisse variables in associated fortran files

Update python-package.yml

4f8684a

upgrade versions

Update build_wheels_and_publish.yml

4c49804

upgrade actions version

katiebreivik and others added 11 commits August 26, 2025 08:14

now using paths in case the user wants to use them. Also handles strings

9483ac5

now read METISSE eeps based on the path specified in METISSE metallic…

417c1bc

…ity files (COSMIC-PopSynth#715)

Capture & Recycle zpars for METISSE (COSMIC-PopSynth#716)

dd1c3f8

* now read METISSE eeps based on the path specified in METISSE metallicity files * add mechanism to capture and recycle zpars

Add z_accuracy_limit and metisse_verbose to COSMIC & inifile (COS…

29218bb

…MIC-PopSynth#719) * added `z_accuracy_limit` and `metisse_verbose` to SSEDict/COSMIC input * added `z_accuracy_limit` and `metisse_verbose` to sse section

Update COSMIC-METISSE interface functions in utils / independent samp…

02656ba

…ler (COSMIC-PopSynth#722) * updated cosmic-metisse interface function call in independent sampler * add handling for 1-line eeps; prevents array bounds error

ok this is a mega merge; see the PR for a full list of how each file …

9c2dfdc

…was handled

version bump

2d6363c

update to latest metisse

b885ce5

katiebreivik and others added 12 commits October 31, 2025 13:42

update docs and version

f5da869

add in the necessary html page and a note for installation from sourc…

4950a4e

…e with a git clone and submodule language

properly set up metisse submodule

73e8e56

update METISSE submodule

9a4d985

this is just cosmetic as far as I can tell

4baa5a0

add progress bar possiblity through kwargs

786e189

Merge branch 'METISSE-integrate-merge' of github.com:katiebreivik/COS…

d26aced

…MIC into METISSE-integrate-merge

fix merge conflicts for develop merge

7c16a3f

fixed the segfaults -- it was an argument order for assign_remnant calls

dcf1c34

update METISSE

beb633c

fix the comprad call in independent by supplying sse as the SSEDict d…

662a963

…efault

fix segfaults by realizing that we had totally lost hrdiag in the mer…

5bc172e

…ge -- doh!

katiebreivik added 4 commits April 16, 2026 09:53

remove unnecessary commented text

dc5a7ce

add the core mass handling for METISSE, including MS core mass growth…

0ba96d7

… yay!

supply stellar_engine as metisse wihtout SSEDict and update default b…

5699097

…sedict to handle list for alpha and acc_lim

Update METISSE submodule

912b88c

katiebreivik merged commit cfd57c8 into COSMIC-PopSynth:develop May 4, 2026
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Metisse integrate merge#728

Metisse integrate merge#728
katiebreivik merged 60 commits into
COSMIC-PopSynth:developfrom
katiebreivik:METISSE-integrate-merge

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