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@BirolLab

Birol Lab

Bioinformatics Technology Lab

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  1. ntRoot ntRoot Public

    🌳 Scalable ancestry from genomic data

    Python 12

  2. ntSynt ntSynt Public

    Detecting multi-genome synteny using minimizer graph mapping

    Python 103 2

  3. goldrush goldrush Public

    Linear-time de novo Long Read Assembler

    C++ 41 2

  4. ntEdit ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    C++ 73 10

  5. AMPlify AMPlify Public

    Attentive deep learning model for antimicrobial peptide prediction

    Python 56 13

  6. NanoSim NanoSim Public

    Nanopore sequence read simulator

    Python 292 64

Repositories

Showing 10 of 92 repositories
  • abyss Public

    🔬 Assemble large genomes using short reads

    BirolLab/abyss’s past year of commit activity
    C++ 328 111 5 0 Updated Mar 11, 2026
  • goldrush Public

    Linear-time de novo Long Read Assembler

    BirolLab/goldrush’s past year of commit activity
    C++ 41 GPL-3.0 2 5 0 Updated Mar 11, 2026
  • goldpolish Public

    GoldPolish (aka GoldRush-Edit) is a long read sequence polisher used in the GoldRush assembler

    BirolLab/goldpolish’s past year of commit activity
    C++ 8 GPL-3.0 0 2 (1 issue needs help) 0 Updated Mar 11, 2026
  • btllib Public

    📚Bioinformatics Technology Lab common code library

    BirolLab/btllib’s past year of commit activity
    C++ 28 7 26 (1 issue needs help) 8 Updated Mar 11, 2026
  • aakomp Public

    Draft genome completeness assessment using k-mer hash based approach

    BirolLab/aakomp’s past year of commit activity
    C++ 2 GPL-3.0 0 0 0 Updated Mar 11, 2026
  • LINKS Public

    ⛓ Long Interval Nucleotide K-mer Scaffolder

    BirolLab/LINKS’s past year of commit activity
    Perl 73 GPL-3.0 16 0 0 Updated Mar 11, 2026
  • btl Public

    🔬 Bioinformatics Technology Lab, Genome Sciences Centre

    BirolLab/btl’s past year of commit activity
    HTML 2 3 4 0 Updated Mar 11, 2026
  • ABySS-explorer Public

    Visualize genome sequence assemblies

    BirolLab/ABySS-explorer’s past year of commit activity
    Java 6 GPL-3.0 0 0 0 Updated Mar 11, 2026
  • triAMPh Public

    TaRget Identification of AntiMicrobial Peptides with Heterogeneous graph attention networks

    BirolLab/triAMPh’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Mar 11, 2026
  • RAILS Public

    🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling

    BirolLab/RAILS’s past year of commit activity
    Perl 27 GPL-3.0 5 0 0 Updated Mar 10, 2026
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