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Support BIGINT Primary Keys #346
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labkey-matthewb
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Support BIGINT Primary Keys #346
labkey-matthewb
wants to merge
63
commits into
BimberLab:discvr-25.3
from
LabKey:fb_long_is_the_new_int
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* Prefer bcftools/liftover * Support tool to write 10x barcodes to file * Correct argument * Support SVType annotation * Bugfix to UpdateSeuratPrototype * Expose option to change strandedness threshold * Auto-detect and remove '=' prefix on import * Support new TCR components * Bugfix to PoolImportPanel
Merge discvr-25.3 to develop
… to use FileLike (#350) * Update ValidateReadsetFilesAction and ImportReferenceSequencesAction to use FileLike * Remove unused DownloadTempImageAction and ConvertTextToFileAction and its associated form classes.
Merge discvr-25.3 to develop
* Minor auto-refactor code cleanup on a massive scale * Remove unnecessary cast
Merge discvr-25.3 to develop
* Disable scijava repository during server outage
* Disable scijava dependency during server outage
* Disable scijava repository during server outage
Merge discvr-25.3 to develop
Merge 25.3 to develop
Merge discvr-25.3 to develop
Merge discvr-25.3 to develop
…alue (rowId, objectId, etc).
…alue (rowId, objectId, etc).
Bump htsjdk/picard versions
bulk search/replace
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Rationale
Implement support for tables with BIGINT primary keys. E.g. RowId/ObjectId BIGSERIAL
Because of the large number of shared classes, utilities, services, etc, a lot of code was migrated to used Long. Code should now assume that an generic integer object key (as opposed to a known table PK), could be a Long.
This PR is aimed at a) Supporting ObjectID BIGSERIAL b) making it possible (but not automatic) to migrate tables that want to use RowId BIGSERIAL.
Related Pull Requests
Changes
New safer collection classes
class Int/LongHashMap
class Int/LongHashSet
explicit Class for key values in Map Objects returned by BaseSelector
Selector.getValueMap(Class key)
safe "cast" using asInteger or asLong, as opposed to (Integer) and (Long)