Feature/omics layers#49
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DanielGarbozo merged 5 commits intoMay 19, 2026
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Summary
This PR introduces a new omics-layers feature set to OmicsKit, adding survival analysis utilities,
multi-omics visualization functions, and genomic track support, along with full documentation and tests
for each addition.
New Functions
get_cox()+nice_forest()– Cox proportional hazards regression and forest plot visualization for survival analysis.get_glm()+nice_ROC()– Generalized linear model fitting with ROC curve visualization for binary outcome analysis.trend_filter()/ updateddetect_filter()– Trend-based filtering utilities for omics feature selection.nice_KM()– Kaplan-Meier survival curve visualization (tests added).nice_circos()– Circos plot function for multi-omics circular visualization.nice_GenomeTrack()– Genome track visualization with Ensembl-driven annotations and local annotation support.Fixes & Improvements
nice_GenomeTrack().biomaRtcalls inget_annotations()tests for CI compatibility.get_annotationtests to avoid version drift.Chores
upstream/devvia merge commit.