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Update Ensembl annotation workflow, tests, and vignettes#44

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DanielGarbozo merged 7 commits into
BigMindLab:devfrom
DanielGarbozo:feature/DEA-functions
May 6, 2026
Merged

Update Ensembl annotation workflow, tests, and vignettes#44
DanielGarbozo merged 7 commits into
BigMindLab:devfrom
DanielGarbozo:feature/DEA-functions

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Summary

  • Bump minimum R version to 4.4.0.
  • Refactor get_annotations() to improve Ensembl queries, symbol handling, and output.
  • Add Ensembl helper utilities: list_ensembl_versions() and list_ensembl_species().
  • Add internal helpers for host/symbol resolution and BioMart error handling.
  • Add testthat coverage for get_annotations() and helpers.
  • Update DEA/PA vignettes to reflect new annotation workflow.

@DanielGarbozo DanielGarbozo merged commit f6fa0eb into BigMindLab:dev May 6, 2026
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