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1. plasmidID plasmidID Public

   PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

   Shell 43 10

2. viralrecon viralrecon Public

   Forked from nf-core/viralrecon

   Assembly and intrahost/low-frequency variant calling for viral samples

   Nextflow 1 5

3. iskylims iskylims Public

   is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

   Python 91 41

4. buisciii-tools buisciii-tools Public

   set of helper tools for bu-isciii management of its core services portfolio.

   Python 3 19

5. BU-ISCIII BU-ISCIII Public

   Our Wiki and main public documentation repository.

   6 11

6. taranys taranys Public

   cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.

   Jupyter Notebook 9 5