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Updates to public quilt data #166
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@mfs4rd can you add some description of what this PR is doing? For example why removing the test dataset downloading? |
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@vianamp Updated PR description. Test data downloading has been removed since there are no subsets of the data provided in the public dataset as in the private dataset. We would need to implement a method of properly sampling the dataset and trimming the relevant manifests if we want to keep this feature. |
vianamp
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Dec 4, 2024
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Thank you, Filip. Looks great!
| --image_csv ./quilt_data_contrasted_test/metadata.csv \ | ||
| --defaults_json fish_morphology_code/cellprofiler/cellprofiler_image_set_defaults.json \ | ||
| --path_key rescaled_2D_fov_tiff_path \ | ||
| --local_path ./quilt_data_contrasted_test \ |
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Should we remove test from the path since there is no longer a test set?
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Purpose
This updates the quilt paths used to download data used in the paper to match what is on the publicly available dataset
Key changes