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AiIkram/README.md

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🧠 About Me

I'm a Clinical Data Scientist building a research career at the intersection of AI and medicine. My work spans medical imaging, graph neural networks, and neuroscience β€” developing models that can support clinicians with more accurate, consistent, and accessible diagnostics.

  • πŸ”¬ Presented at MICCAI 2025 β€” poster presentation on breast cancer segmentation in DCE-MRI
  • πŸŽ“ Currently in the BASIRA 2026 Program (Master GNNs for Rising Stars) @ Imperial College London (I-X), under Prof. Islem Rekik
  • πŸ† Designed and ran a GNN competition on Parkinson's detection β€” 18 forks, live leaderboard, auto-scoring
  • πŸ’Ό Data Scientist at CAAT (Compagnie AlgΓ©rienne des Assurances) β€” building AI-driven risk models
  • 🌍 Seeking a PhD position in medical AI β€” oncology, neuroimaging, or clinical informatics
  • πŸ“ Based in Algiers, Algeria

πŸ”¬ Active Research (2025–2026)

These projects are currently in progress. Repos will be made public as work matures.

Project Description Methods
🧠 Pediatric Brain Cancer Segmentation Tumor segmentation in pediatric brain MRI using transfer learning from adult models nnU-Net · Transfer Learning · 3D MRI
🧬 Parkinson's Early Detection Early-stage PD biomarker detection from multi-modal clinical data GNNs · Acoustic Features · Classification
⚑ GNN for EEG Stroke Detection Graph-based modeling of EEG signals for early stroke detection GNNs · EEG · Signal Processing

πŸ† Highlighted Work

🩺 MICCAI 2025 β€” Deep Breath Workshop

Selective Phase-Aware Training of nnU-Net for Robust Breast Cancer Segmentation in Multi-Center DCE-MRI

Poster Presentation Β· Daejeon, South Korea Β· September 2025

  • Addressed multi-center variability in DCE-MRI breast tumor segmentation
  • Demonstrated that quality-selective training (DUKE + NACT) outperformed larger mixed datasets
  • Best validation Dice score: 0.72 using 3-phase nnU-Net 3D full-resolution
  • Key insight: curating training data by image quality > training on more data

πŸ“Ž View Repository


🧠 PARK-GNN Challenge β€” Designed & Organized

Parkinson's Disease Detection using Graph Neural Networks

Competition Designer & Organizer Β· BASIRA 2026 Program Β· 2026

  • Designed a full research competition from scratch: dataset, graph construction, evaluation pipeline, auto-scoring
  • Built a live leaderboard with GitHub Actions for automated submission scoring
  • Framed PD detection as a node classification problem on KNN + subject-connectivity graphs (195 nodes, 22 acoustic features)
  • Challenge attracted 18 forks and active community participation
  • Covers GNN concepts: GCN, GAT, GraphSAGE, message passing, class imbalance handling

πŸ“Ž View Challenge Repository Β· πŸ† Live Leaderboard


🧰 Technical Stack

Medical Imaging & Deep Learning

nnU-Net SimpleITK 3D Slicer NIfTI DCE-MRI TensorFlow PyTorch

Graph Neural Networks & Neuroscience

PyG DGL GCN GAT EEG

Data Science & ML

Python Scikit-learn Pandas NumPy SQL

Visualization & Cloud

Power BI Streamlit Google Cloud QGIS


πŸ“ Featured Projects

Project Description Stack
🩺 MICCAI MAMA-MIA Challenge Breast tumor segmentation in multi-center DCE-MRI with selective phase-aware nnU-Net training nnU-Net · PyTorch · NIfTI
🧠 PARK-GNN Challenge Full GNN competition I designed β€” PD detection from acoustic voice graphs, live leaderboard PyG Β· DGL Β· GitHub Actions
πŸ“Š Customer Churn & Recommender System Predictive churn model (95% accuracy) + GIS spatial analysis across 39 provinces for Djezzy Scikit-learn Β· QGIS Β· Power BI
πŸ›°οΈ Urban Green Space Mapping U-Net segmentation on satellite imagery for Frankfurt green space detection U-Net Β· QGIS Β· Rasterio
πŸ“– Arabic Manuscript Detection Active learning + OCR for historical Arabic handwritten document classification TensorFlow Β· OpenCV Β· NLP
πŸŽ“ WQU Applied Data Science Lab 8 end-to-end data science projects across scientific computing, ML, and deployment Python Β· SQL Β· APIs

πŸ“… Training & Schools

  • BASIRA 2026 β€” Master GNNs for Rising Stars Β· Imperial College London (I-X) Β· Online
  • MICCAI Winter School 2025 Β· MBZUAI, Abu Dhabi
  • RISE-MICCAI Summer School 2025 Β· Diffusion Models & Graph Learning Β· Online

πŸ“ˆ GitHub Stats


🀝 Open To

  • πŸŽ“ PhD positions in medical AI, clinical data science, or computational medicine
  • πŸ”¬ Remote research collaborations in oncology, neuroimaging, or clinical informatics
  • πŸ§‘β€πŸ« Mentorship exchanges β€” I design challenges, teach, and love learning from others

"The goal is not just to build models that perform, but models that help people."

Pinned Loading

  1. ImageClassifierProject ImageClassifierProject Public

    Final Project of the Udacity AI Programming with Python Nanodegree

    HTML

  2. WQU-Applied-DataScience-Lab WQU-Applied-DataScience-Lab Public

    I have successfully completed a 16-week and 8 end-to-end, applied data science projects of the Applied Data Science Lab module at WorldQuant University. The mini-projects included scientific comput…

    1

  3. beyza17/MICCAI_Challange beyza17/MICCAI_Challange Public

    Python 3 1

  4. MICCAI-MAMA-MIA-CHALLENGE MICCAI-MAMA-MIA-CHALLENGE Public

    Submission for MICCAI 2025 MAMA-MIA Challenge: Primary tumor segmentation in breast DCE-MRI using nnU-Net with quality-aware training.

    Python 1

  5. gnn-parkinsons-challenge gnn-parkinsons-challenge Public

    GNN Challenge: Detect Parkinson's Disease using Graph Neural Networks

    Python 18