chore: 1.0 cleanup — remove stubs, dead scripts, stale docs, reduce tarball

- Remove ngrok suggestions from CLI and setup commands
- Delete scripts/stop-notify-webhook.sh (dead SMS webhook script)
- Delete docs/NOTIFICATIONS_SPEC.md (removed feature)
- Remove SMS/WhatsApp reference from PROMPT_PLAN.md roadmap
- Replace stubbed Linear MCP handlers with honest errors
- Remove dead LLM context retrieval stub from context handlers
- Tighten package.json files field: 856 files/2.4MB → 676 files/2.1MB
  - Only ship runtime scripts (gepa, git-hooks, install, wrappers)
  - Exclude dist/scripts/ (compiled dev/test scripts)

Author: StackMemory Bot (CLI)

.npmignore

@@ -24,10 +24,7 @@ tests/
 *.spec.*
 coverage/
 
-# Scripts (keep essential ones)
-scripts/fix-*.js
-scripts/update-*.js
-scripts/reorganize-*.sh
+# dist/scripts excluded via package.json files field (only dist/src ships)
 attention-scoring/
 p2p-sync/
 mcp-server/

docs/NOTIFICATIONS_SPEC.md

@@ -121,4 +121,3 @@
 - [ ] PostgreSQL production adapter (pgvector, LISTEN/NOTIFY)
 - [ ] Specish API — OpenAPI-based tool bridge
 - [ ] Linear Chrome extension (ticket → subagent pipeline)
-- [ ] SMS/WhatsApp notification system

docs/specs/PROMPT_PLAN.md

@@ -19,8 +19,32 @@
   "types": "dist/src/index.d.ts",
   "files": [
     "bin",
-    "dist",
-    "scripts",
+    "dist/src",
+    "scripts/gepa",
+    "scripts/git-hooks",
+    "scripts/hooks",
+    "scripts/setup",
+    "scripts/setup.sh",
+    "scripts/install.sh",
+    "scripts/install-global.sh",
+    "scripts/install-claude-hooks.sh",
+    "scripts/install-auto-background-hook.sh",
+    "scripts/install-sweep-hook.sh",
+    "scripts/install-code-execution-hooks.sh",
+    "scripts/install-claude-hooks-auto.js",
+    "scripts/claude-worktree-manager.sh",
+    "scripts/claude-worktree-setup.sh",
+    "scripts/claude-worktree-monitor.sh",
+    "scripts/claude-code-wrapper.sh",
+    "scripts/claude-sm-setup.sh",
+    "scripts/codex-wrapper.sh",
+    "scripts/opencode-wrapper.sh",
+    "scripts/stackmemory-daemon.sh",
+    "scripts/ralph-loop-implementation.js",
+    "scripts/setup-claude-integration.sh",
+    "scripts/setup-claude-integration.js",
+    "scripts/verify-dist.cjs",
+    "scripts/smoke-init-db.sh",
     "templates",
     "README.md",
     "LICENSE"