refactor(tests): code analysis engine

changes:
  - file: test_cli.py
    area: cli
    added: [TestCLINewFeaturesE2E, temp_org, TestCLIShellE2E, temp_project, _run_shell]
    new_tests: 10
    modified: [TestCLI]

testing:
  new_tests: 10
  scenarios:
    - shell_org_mode_dry_run
    - shell_diff
    - shell_version
    - shell_init
    - shell_check
    - shell_generate_with_sections
    - shell_org_mode
    - shell_generate
    - shell_generate_creates_files
    - shell_help

stats:
  lines: "+9974/-9909 (net +65)"
  files: 13
  complexity: "Large structural change (normalized)"

Author: tom-sapletta-com

CHANGELOG.md

@@ -7,6 +7,30 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [3.0.7] - 2026-03-08
+
+### Docs
+- Update project/context.md
+
+### Test
+- Update tests/project/dashboard.html
+- Update tests/project/project.toon
+- Update tests/project/project.yaml
+- Update tests/test_cli.py
+
+### Other
+- Update project/analysis.json
+- Update project/analysis.toon
+- Update project/analysis.yaml
+- Update project/calls.mmd
+- Update project/dashboard.html
+- Update project/flow.mmd
+- Update project/flow.toon
+- Update project/map.toon
+- Update project/project.toon
+- Update project/project.yaml
+- ... and 1 more files
+
 ## [3.0.6] - 2026-03-08
 
 ### Docs

README.md

@@ -1,6 +1,6 @@
 # code2docs
 
-![version](https://img.shields.io/badge/version-3.0.6-blue) ![python](https://img.shields.io/badge/python-%3E%3D3.9-blue) ![docs](https://img.shields.io/badge/docs-auto--generated-blueviolet)
+![version](https://img.shields.io/badge/version-3.0.7-blue) ![python](https://img.shields.io/badge/python-%3E%3D3.9-blue) ![docs](https://img.shields.io/badge/docs-auto--generated-blueviolet)
 
 > Auto-generate and sync project documentation from source code analysis.
 
@@ -140,7 +140,7 @@ code2docs can update only specific sections of an existing README using markers:
 ```markdown
 <!-- code2docs:start --># code2docs
 
-![version](https://img.shields.io/badge/version-3.0.6-blue) ![python](https://img.shields.io/badge/python-%3E%3D3.9-blue) ![coverage](https://img.shields.io/badge/coverage-unknown-lightgrey) ![functions](https://img.shields.io/badge/functions-276-green)
+![version](https://img.shields.io/badge/version-3.0.7-blue) ![python](https://img.shields.io/badge/python-%3E%3D3.9-blue) ![coverage](https://img.shields.io/badge/coverage-unknown-lightgrey) ![functions](https://img.shields.io/badge/functions-276-green)
 > **276** functions | **57** classes | **51** files | CC̄ = 3.8
 
 > Auto-generated project documentation from source code analysis.

VERSION

@@ -1 +1 @@
-3.0.6
+3.0.7

code2docs/__init__.py

@@ -5,7 +5,7 @@
 README.md, API references, module docs, examples, and architecture diagrams.
 """
 
-__version__ = "3.0.6"
+__version__ = "3.0.7"
 __author__ = "Tom Sapletta"
 
 from .config import Code2DocsConfig

project/analysis.json

@@ -165,10 +165,10 @@ CLASSES:
   SyncConfig                                                0m  CC̄=0.0   max=0.0 
   Code2LlmConfig                                            0m  CC̄=0.0   max=0.0 
   ApiChange                                                 0m  CC̄=0.0   max=0.0 
-  DocstringInfo                                             0m  CC̄=0.0   max=0.0 
-  Endpoint                                                  0m  CC̄=0.0   max=0.0 
   DependencyInfo                                            0m  CC̄=0.0   max=0.0 
   ProjectDependencies                                       0m  CC̄=0.0   max=0.0 
+  Endpoint                                                  0m  CC̄=0.0   max=0.0 
+  DocstringInfo                                             0m  CC̄=0.0   max=0.0 
 
 D:
   code2docs/generators/readme_gen.py:
@@ -280,15 +280,6 @@ Thi...
     e: ContributingGenerator
     ContributingGenerator  # Generate CONTRIBUTING.md by detecting dev tools from pyproje...
       __init__(2)  CC=1.0
-  code2docs/analyzers/docstring_extractor.py:
-    e: DocstringInfo,DocstringExtractor
-    DocstringInfo  # Parsed docstring with sections....
-    DocstringExtractor  # Extract and parse docstrings from AnalysisResult....
-      extract_all(1)  CC=5.0
-        → parse(1)  CC=2.0
-        → _extract_summary(0)  CC=2.0
-        → _parse_sections(2)  CC=8.0
-        → _classify_section(0)  CC=5.0
   code2docs/analyzers/dependency_scanner.py:
     e: DependencyInfo,ProjectDependencies,DependencyScanner
     DependencyInfo  # Information about a project dependency....
@@ -301,6 +292,15 @@ Thi...
         → _parse_dep_string(0)  CC=2.0
         → _parse_setup_py(1)  CC=4.0
         → _parse_requirements_txt(1)  CC=5.0
+  code2docs/analyzers/docstring_extractor.py:
+    e: DocstringInfo,DocstringExtractor
+    DocstringInfo  # Parsed docstring with sections....
+    DocstringExtractor  # Extract and parse docstrings from AnalysisResult....
+      extract_all(1)  CC=5.0
+        → parse(1)  CC=2.0
+        → _extract_summary(0)  CC=2.0
+        → _parse_sections(2)  CC=8.0
+        → _classify_section(0)  CC=5.0
   code2docs/llm_helper.py:
     e: LLMHelper,_get_litellm
     LLMHelper  # Thin wrapper around litellm for documentation generation.
@@ -426,19 +426,19 @@ Generators register t...
     e: run_cli_basic,run_cli_with_config
     run_cli_basic(project_path)
     run_cli_with_config(project_path,config_path)
+  examples/02_configuration.py:
+    e: create_basic_config,create_advanced_config,save_yaml_config_example,load_config_from_yaml
+    create_basic_config()
+    create_advanced_config()
+    save_yaml_config_example(path)
+    load_config_from_yaml(path)
   code2docs/base.py:
     e: GenerateContext,BaseGenerator
     GenerateContext  # Shared context passed to all generators during a run....
     BaseGenerator  # Abstract base for all documentation generators.
 
 Subclasses ...
       __init__(2)  CC=1.0
-  examples/02_configuration.py:
-    e: create_basic_config,create_advanced_config,save_yaml_config_example,load_config_from_yaml
-    create_basic_config()
-    create_advanced_config()
-    save_yaml_config_example(path)
-    load_config_from_yaml(path)
   code2docs/__main__.py:
   examples/quickstart.py:
   examples/advanced_usage.py: