Remove .vscode config, fix test deprecation warnings

- Remove .vscode/ from tracking and set ide_integration: false in cruft.json
- Add .vscode/ back to .gitignore
- Fix set_constrained_layout deprecation (use set_layout_engine)
- Fix SettingWithCopyWarning in test_render_labels.py

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

Author: timtreis

.cruft.json

@@ -12,7 +12,7 @@
       "github_user": "scverse",
       "github_repo": "spatialdata-plot",
       "license": "BSD 3-Clause License",
-      "ide_integration": true,
+      "ide_integration": false,
       "_copy_without_render": [
         ".github/workflows/build.yaml",
         ".github/workflows/test.yaml",

.gitignore

@@ -25,6 +25,7 @@ __pycache__/
 
 # IDEs
 /.idea/
+/.vscode/
 
 format.sh
 

.vscode/extensions.json

@@ -441,7 +441,7 @@ def compare(cls, basename: str, tolerance: float | None = None):
         # Try to get a reasonable layout first (helps with axes/labels)
         if not fig.get_constrained_layout():
             try:
-                fig.set_constrained_layout(True)
+                fig.set_layout_engine("constrained")
             except (ValueError, RuntimeError):
                 try:
                     fig.tight_layout(pad=2.0, rect=[0.02, 0.02, 0.98, 0.98])

.vscode/launch.json

@@ -244,7 +244,7 @@ def _make_tablemodel_with_categorical_labels(self, sdata_blobs, labels_name: str
         )
         adata.obs["instance_id"] = instances.values
         adata.obs["category"] = get_standard_RNG().choice(["a", "b", "c"], size=adata.n_obs)
-        adata.obs["category"][:3] = ["a", "b", "c"]
+        adata.obs.loc[adata.obs.index[:3], "category"] = ["a", "b", "c"]
         adata.obs["region"] = labels_name
         table = TableModel.parse(
             adata=adata,
@@ -320,7 +320,7 @@ def test_plot_respects_custom_colors_from_uns(self, sdata_blobs: SpatialData):
         )
         adata.obs["instance_id"] = instances.values
         adata.obs["category"] = get_standard_RNG().choice(["a", "b", "c"], size=adata.n_obs)
-        adata.obs["category"][:3] = ["a", "b", "c"]
+        adata.obs.loc[adata.obs.index[:3], "category"] = ["a", "b", "c"]
         adata.obs["region"] = labels_name
         table = TableModel.parse(
             adata=adata,
@@ -347,7 +347,7 @@ def test_plot_respects_custom_colors_from_uns_with_groups_and_palette(
         )
         adata.obs["instance_id"] = instances.values
         adata.obs["category"] = get_standard_RNG().choice(["a", "b", "c"], size=adata.n_obs)
-        adata.obs["category"][:3] = ["a", "b", "c"]
+        adata.obs.loc[adata.obs.index[:3], "category"] = ["a", "b", "c"]
         adata.obs["region"] = labels_name
         table = TableModel.parse(
             adata=adata,