Skip to content

Commit 0c28935

Browse files
tpietzschctrueden
andcommitted
Update component versions for ImgLib v7 upgrade
* imagej-common: 2.1.0 -> 2.1.1 * imagej-mesh: 0.8.1 -> 0.8.2 * imagej-ops: 2.1.0 -> 2.2.0 * imglib2: 6.3.0 -> 7.1.1 * imglib2-algorithm: 0.14.0 -> 0.16.0 * imglib2-cache: 1.0.0-beta-17 -> 1.0.0-beta-19 * imglib2-ij: 2.0.1 -> 2.0.3 * imglib2-imglyb: 2.0.0 -> 2.0.1 * imglib2-mesh: 1.0.0 -> 1.1.0 * imglib2-realtransform: 4.0.2 -> 4.0.3 * imglib2-roi: 0.14.1 -> 0.15.1 * imglib2-unsafe: 1.0.0 -> 1.1.0 * SPIM_Registration: 5.0.25 -> 5.0.26 * bigwarp: 9.1.2 -> 9.1.4 * z_spacing: 1.1.2 -> 1.1.3 * bigdataviewer-core: 10.4.14 -> 10.6.1 * bigdataviewer-vistools: 1.0.0-beta-34 -> 1.0.0-beta-36 * bigdataviewer_fiji: 6.3.0 -> 6.4.1 * spim_data: 2.2.7 -> 2.3.3 * TrackMate: 7.12.1 -> 7.14.0 * TrackMate-Skeleton: 2.0.1 -> 2.0.3 * imglib2-label-multisets: 0.14.0 -> 0.15.0 * n5: 3.2.0 -> 3.3.0 * n5-aws-s3: 4.2.0 -> 4.2.1 * n5-google-cloud: 4.1.0 -> 4.1.1 * n5-ij: 4.2.1 -> 4.2.2 * n5-imglib2: 7.0.0 -> 7.0.2 * n5-zarr: 1.3.4 -> 1.3.5 * BigStitcher: 1.2.10 -> 2.0.0 * multiview-reconstruction: 3.2.7 -> 4.0.0 * labkit-pixel-classification: 0.1.17 -> 0.1.18 * labkit-ui: 0.3.11 -> 0.4.0 This accounts for backwards-incompatible changes in the ImgLib2 API. Co-authored-by: Curtis Rueden <ctrueden@wisc.edu>
1 parent 2f1b70a commit 0c28935

File tree

1 file changed

+32
-32
lines changed

1 file changed

+32
-32
lines changed

pom.xml

Lines changed: 32 additions & 32 deletions
Original file line numberDiff line numberDiff line change
@@ -482,7 +482,7 @@
482482
<net.imagej.ij1-patcher.version>${ij1-patcher.version}</net.imagej.ij1-patcher.version>
483483

484484
<!-- ImageJ Common - https://github.com/imagej/imagej-common -->
485-
<imagej-common.version>2.1.0</imagej-common.version>
485+
<imagej-common.version>2.1.1</imagej-common.version>
486486
<net.imagej.imagej-common.version>${imagej-common.version}</net.imagej.imagej-common.version>
487487

488488
<!-- ImageJ Deprecated - https://github.com/imagej/imagej-deprecated -->
@@ -502,7 +502,7 @@
502502
<net.imagej.imagej-matlab.version>${imagej-matlab.version}</net.imagej.imagej-matlab.version>
503503

504504
<!-- ImageJ Mesh - https://github.com/imagej/imagej-mesh -->
505-
<imagej-mesh.version>0.8.1</imagej-mesh.version>
505+
<imagej-mesh.version>0.8.2</imagej-mesh.version>
506506
<net.imagej.imagej-mesh.version>${imagej-mesh.version}</net.imagej.imagej-mesh.version>
507507

508508
<!-- ImageJ Mesh IO - https://github.com/imagej/imagej-mesh-io -->
@@ -526,7 +526,7 @@
526526
<net.imagej.imagej-opencv.version>${imagej-opencv.version}</net.imagej.imagej-opencv.version>
527527

528528
<!-- ImageJ Ops - https://github.com/imagej/imagej-ops -->
529-
<imagej-ops.version>2.1.0</imagej-ops.version>
529+
<imagej-ops.version>2.2.0</imagej-ops.version>
530530
<net.imagej.imagej-ops.version>${imagej-ops.version}</net.imagej.imagej-ops.version>
531531

532532
<!-- ImageJ Plugins: Batch - https://github.com/imagej/imagej-plugins-batch -->
@@ -580,11 +580,11 @@
580580
<!-- ImgLib2 - https://github.com/imglib -->
581581

582582
<!-- ImgLib2 - https://github.com/imglib/imglib2 -->
583-
<imglib2.version>6.3.0</imglib2.version>
583+
<imglib2.version>7.1.2</imglib2.version>
584584
<net.imglib2.imglib2.version>${imglib2.version}</net.imglib2.imglib2.version>
585585

586586
<!-- ImgLib2 Algorithms - https://github.com/imglib/imglib2-algorithm -->
587-
<imglib2-algorithm.version>0.14.0</imglib2-algorithm.version>
587+
<imglib2-algorithm.version>0.16.0</imglib2-algorithm.version>
588588
<net.imglib2.imglib2-algorithm.version>${imglib2-algorithm.version}</net.imglib2.imglib2-algorithm.version>
589589

590590
<!-- ImgLib2 Algorithms FFT - https://github.com/imglib/imglib2-algorithm-fft -->
@@ -596,31 +596,31 @@
596596
<net.imglib2.imglib2-algorithm-gpl.version>${imglib2-algorithm-gpl.version}</net.imglib2.imglib2-algorithm-gpl.version>
597597

598598
<!-- ImgLib2 Cache - https://github.com/imglib/imglib2-cache -->
599-
<imglib2-cache.version>1.0.0-beta-17</imglib2-cache.version>
599+
<imglib2-cache.version>1.0.0-beta-19</imglib2-cache.version>
600600
<net.imglib2.imglib2-cache.version>${imglib2-cache.version}</net.imglib2.imglib2-cache.version>
601601

602602
<!-- ImgLib2 IJ - https://github.com/imglib/imglib2-ij -->
603-
<imglib2-ij.version>2.0.1</imglib2-ij.version>
603+
<imglib2-ij.version>2.0.3</imglib2-ij.version>
604604
<net.imglib2.imglib2-ij.version>${imglib2-ij.version}</net.imglib2.imglib2-ij.version>
605605

606606
<!-- ImgLib2 ImgLyb - https://github.com/imglib/imglib2-imglyb -->
607-
<imglib2-imglyb.version>2.0.0</imglib2-imglyb.version>
607+
<imglib2-imglyb.version>2.0.1</imglib2-imglyb.version>
608608
<net.imglib2.imglib2-imglyb.version>${imglib2-imglyb.version}</net.imglib2.imglib2-imglyb.version>
609609

610610
<!-- ImgLib2 Mesh - https://github.com/imglib/imglib2-mesh -->
611-
<imglib2-mesh.version>1.0.0</imglib2-mesh.version>
611+
<imglib2-mesh.version>1.1.0</imglib2-mesh.version>
612612
<net.imglib2.imglib2-mesh.version>${imglib2-mesh.version}</net.imglib2.imglib2-mesh.version>
613613

614614
<!-- ImgLib2 RealTransform - https://github.com/imglib/imglib2-realtransform -->
615-
<imglib2-realtransform.version>4.0.2</imglib2-realtransform.version>
615+
<imglib2-realtransform.version>4.0.3</imglib2-realtransform.version>
616616
<net.imglib2.imglib2-realtransform.version>${imglib2-realtransform.version}</net.imglib2.imglib2-realtransform.version>
617617

618618
<!-- ImgLib2 ROI - https://github.com/imglib/imglib2-roi -->
619-
<imglib2-roi.version>0.14.1</imglib2-roi.version>
619+
<imglib2-roi.version>0.15.1</imglib2-roi.version>
620620
<net.imglib2.imglib2-roi.version>${imglib2-roi.version}</net.imglib2.imglib2-roi.version>
621621

622622
<!-- ImgLib2 Unsafe - https://github.com/imglib/imglib2-unsafe -->
623-
<imglib2-unsafe.version>1.0.0</imglib2-unsafe.version>
623+
<imglib2-unsafe.version>1.1.0</imglib2-unsafe.version>
624624
<net.imglib2.imglib2-unsafe.version>${imglib2-unsafe.version}</net.imglib2.imglib2-unsafe.version>
625625

626626
<!-- SCIFIO - https://github.com/scifio -->
@@ -861,7 +861,7 @@
861861
<SPIM_Opener.version>2.0.2</SPIM_Opener.version>
862862
<sc.fiji.SPIM_Opener.version>${SPIM_Opener.version}</sc.fiji.SPIM_Opener.version>
863863

864-
<SPIM_Registration.version>5.0.25</SPIM_Registration.version>
864+
<SPIM_Registration.version>5.0.26</SPIM_Registration.version>
865865
<sc.fiji.SPIM_Registration.version>${SPIM_Registration.version}</sc.fiji.SPIM_Registration.version>
866866

867867
<Samples.version>2.0.3</Samples.version>
@@ -991,7 +991,7 @@
991991
<jitk.jitk-tps.version>${jitk-tps.version}</jitk.jitk-tps.version>
992992

993993
<!-- BigWarp - https://github.com/saalfeldlab/bigwarp -->
994-
<bigwarp.version>9.1.2</bigwarp.version>
994+
<bigwarp.version>9.1.4</bigwarp.version>
995995
<bigwarp_fiji.version>${bigwarp.version}</bigwarp_fiji.version>
996996
<sc.fiji.bigwarp_fiji.version>${bigwarp_fiji.version}</sc.fiji.bigwarp_fiji.version>
997997

@@ -1006,35 +1006,35 @@
10061006
<sc.fiji.trakem2_tps.version>${trakem2_tps.version}</sc.fiji.trakem2_tps.version>
10071007

10081008
<!-- Z-Spacing correction - https://github.com/saalfeldlab/z-spacing -->
1009-
<z_spacing.version>1.1.2</z_spacing.version>
1009+
<z_spacing.version>1.1.3</z_spacing.version>
10101010
<sc.fiji.z_spacing.version>${z_spacing.version}</sc.fiji.z_spacing.version>
10111011

10121012
<!-- BigDataViewer - https://github.com/bigdataviewer -->
10131013

10141014
<!-- BigDataViewer Core - https://github.com/bigdataviewer/bigdataviewer-core -->
1015-
<bigdataviewer-core.version>10.4.14</bigdataviewer-core.version>
1015+
<bigdataviewer-core.version>10.6.1</bigdataviewer-core.version>
10161016
<sc.fiji.bigdataviewer-core.version>${bigdataviewer-core.version}</sc.fiji.bigdataviewer-core.version>
10171017

10181018
<!-- BigDataServer - https://github.com/bigdataviewer/bigdataviewer-server -->
10191019
<bigdataviewer-server.version>3.1.2</bigdataviewer-server.version>
10201020
<sc.fiji.bigdataviewer-server.version>${bigdataviewer-server.version}</sc.fiji.bigdataviewer-server.version>
10211021

10221022
<!-- BigDataViewer Visualization Tools - https://github.com/bigdataviewer/bigdataviewer-vistools -->
1023-
<bigdataviewer-vistools.version>1.0.0-beta-34</bigdataviewer-vistools.version>
1023+
<bigdataviewer-vistools.version>1.0.0-beta-36</bigdataviewer-vistools.version>
10241024
<sc.fiji.bigdataviewer-vistools.version>${bigdataviewer-vistools.version}</sc.fiji.bigdataviewer-vistools.version>
10251025

10261026
<!-- BigDataViewer Fiji - https://github.com/bigdataviewer/bigdataviewer_fiji -->
1027-
<bigdataviewer_fiji.version>6.3.0</bigdataviewer_fiji.version>
1027+
<bigdataviewer_fiji.version>6.4.1</bigdataviewer_fiji.version>
10281028
<sc.fiji.bigdataviewer_fiji.version>${bigdataviewer_fiji.version}</sc.fiji.bigdataviewer_fiji.version>
10291029

10301030
<!-- SPIM Data - https://github.com/bigdataviewer/spimdata -->
1031-
<spim_data.version>2.2.7</spim_data.version>
1031+
<spim_data.version>2.3.3</spim_data.version>
10321032
<sc.fiji.spim_data.version>${spim_data.version}</sc.fiji.spim_data.version>
10331033

10341034
<!-- TrackMate - https://github.com/trackmate-sc -->
10351035

10361036
<!-- TrackMate - https://github.com/trackmate-sc/TrackMate -->
1037-
<TrackMate.version>7.12.1</TrackMate.version>
1037+
<TrackMate.version>7.14.0</TrackMate.version>
10381038
<sc.fiji.TrackMate.version>${TrackMate.version}</sc.fiji.TrackMate.version>
10391039

10401040
<!-- TrackMate-Cellpose - https://github.com/trackmate-sc/TrackMate-Cellpose -->
@@ -1068,7 +1068,7 @@
10681068
<sc.fiji.TrackMate-Oneat.version>${TrackMate-Oneat.version}</sc.fiji.TrackMate-Oneat.version>
10691069

10701070
<!-- TrackMate-Skeleton - https://github.com/trackmate-sc/TrackMate-Skeleton -->
1071-
<TrackMate-Skeleton.version>2.0.1</TrackMate-Skeleton.version>
1071+
<TrackMate-Skeleton.version>2.0.3</TrackMate-Skeleton.version>
10721072
<sc.fiji.TrackMate-Skeleton.version>${TrackMate-Skeleton.version}</sc.fiji.TrackMate-Skeleton.version>
10731073

10741074
<!-- TrackMate-StarDist - https://github.com/trackmate-sc/TrackMate-StarDist -->
@@ -1105,35 +1105,35 @@
11051105
<!-- N5 - https://github.com/saalfeldlab/n5 -->
11061106

11071107
<!-- ImgLib2 Label Multisets - https://github.com/saalfeldlab/imglib2-label-multisets -->
1108-
<imglib2-label-multisets.version>0.14.0</imglib2-label-multisets.version>
1108+
<imglib2-label-multisets.version>0.15.0</imglib2-label-multisets.version>
11091109
<net.imglib2.imglib2-label-multisets.version>${imglib2-label-multisets.version}</net.imglib2.imglib2-label-multisets.version>
11101110

11111111
<!-- N5 - https://github.com/saalfeldlab/n5 -->
1112-
<n5.version>3.2.0</n5.version>
1112+
<n5.version>3.3.0</n5.version>
11131113
<org.janelia.saalfeldlab.n5.version>${n5.version}</org.janelia.saalfeldlab.n5.version>
11141114

11151115
<!-- N5 AWS S3 - https://github.com/saalfeldlab/n5-aws-s3 -->
1116-
<n5-aws-s3.version>4.2.0</n5-aws-s3.version>
1116+
<n5-aws-s3.version>4.2.1</n5-aws-s3.version>
11171117
<org.janelia.saalfeldlab.n5-aws-s3.version>${n5-aws-s3.version}</org.janelia.saalfeldlab.n5-aws-s3.version>
11181118

11191119
<!-- N5 Blosc - https://github.com/saalfeldlab/n5-blosc -->
11201120
<n5-blosc.version>1.1.1</n5-blosc.version>
11211121
<org.janelia.saalfeldlab.n5-blosc.version>${n5-blosc.version}</org.janelia.saalfeldlab.n5-blosc.version>
11221122

11231123
<!-- N5 Google Cloud - https://github.com/saalfeldlab/n5-google-cloud -->
1124-
<n5-google-cloud.version>4.1.0</n5-google-cloud.version>
1124+
<n5-google-cloud.version>4.1.1</n5-google-cloud.version>
11251125
<org.janelia.saalfeldlab.n5-google-cloud.version>${n5-google-cloud.version}</org.janelia.saalfeldlab.n5-google-cloud.version>
11261126

11271127
<!-- N5 HDF5 Bindings - https://github.com/saalfeldlab/n5-hdf5 -->
11281128
<n5-hdf5.version>2.2.0</n5-hdf5.version>
11291129
<org.janelia.saalfeldlab.n5-hdf5.version>${n5-hdf5.version}</org.janelia.saalfeldlab.n5-hdf5.version>
11301130

11311131
<!-- N5 ImageJ Bindings - https://github.com/saalfeldlab/n5-ij -->
1132-
<n5-ij.version>4.2.1</n5-ij.version>
1132+
<n5-ij.version>4.2.2</n5-ij.version>
11331133
<org.janelia.saalfeldlab.n5-ij.version>${n5-ij.version}</org.janelia.saalfeldlab.n5-ij.version>
11341134

11351135
<!-- N5 ImgLib2 Bindings - https://github.com/saalfeldlab/n5-imglib2 -->
1136-
<n5-imglib2.version>7.0.0</n5-imglib2.version>
1136+
<n5-imglib2.version>7.0.2</n5-imglib2.version>
11371137
<org.janelia.saalfeldlab.n5-imglib2.version>${n5-imglib2.version}</org.janelia.saalfeldlab.n5-imglib2.version>
11381138

11391139
<!-- N5 Universe - https://github.com/saalfeldlab/n5-universe -->
@@ -1145,7 +1145,7 @@
11451145
<org.janelia.saalfeldlab.n5-viewer_fiji.version>${n5-viewer_fiji.version}</org.janelia.saalfeldlab.n5-viewer_fiji.version>
11461146

11471147
<!-- N5 Zarr - https://github.com/saalfeldlab/n5-zarr -->
1148-
<n5-zarr.version>1.3.4</n5-zarr.version>
1148+
<n5-zarr.version>1.3.5</n5-zarr.version>
11491149
<org.janelia.saalfeldlab.n5-zarr.version>${n5-zarr.version}</org.janelia.saalfeldlab.n5-zarr.version>
11501150

11511151
<!-- N5 ZStandard - https://github.com/JaneliaSciComp/n5-zstandard -->
@@ -1178,8 +1178,8 @@
11781178
<net.haesleinhuepf.clijx-weka_.version>${clijx-weka_.version}</net.haesleinhuepf.clijx-weka_.version>
11791179

11801180
<!-- BigStitcher - https://imagej.net/plugins/bigstitcher -->
1181-
<BigStitcher.version>1.2.10</BigStitcher.version>
1182-
<multiview-reconstruction.version>3.2.7</multiview-reconstruction.version>
1181+
<BigStitcher.version>2.0.0</BigStitcher.version>
1182+
<multiview-reconstruction.version>4.0.0</multiview-reconstruction.version>
11831183
<multiview-simulation.version>0.2.0</multiview-simulation.version>
11841184
<net.preibisch.BigStitcher.version>${BigStitcher.version}</net.preibisch.BigStitcher.version>
11851185
<net.preibisch.multiview-reconstruction.version>${multiview-reconstruction.version}</net.preibisch.multiview-reconstruction.version>
@@ -1207,8 +1207,8 @@
12071207
<sc.fiji.MaMuT.version>${MaMuT.version}</sc.fiji.MaMuT.version>
12081208

12091209
<!-- Labkit - https://imagej.net/plugins/labkit -->
1210-
<labkit-pixel-classification.version>0.1.17</labkit-pixel-classification.version>
1211-
<labkit-ui.version>0.3.11</labkit-ui.version>
1210+
<labkit-pixel-classification.version>0.1.18</labkit-pixel-classification.version>
1211+
<labkit-ui.version>0.4.0</labkit-ui.version>
12121212
<sc.fiji.labkit-pixel-classification.version>${labkit-pixel-classification.version}</sc.fiji.labkit-pixel-classification.version>
12131213
<sc.fiji.labkit-ui.version>${labkit-ui.version}</sc.fiji.labkit-ui.version>
12141214

0 commit comments

Comments
 (0)