calc_window_mappability.py

[lmanchon]

--Hi,

annotate_windows.sh failed with:

Traceback (most recent call last):
File "/clamms/calc_window_mappability.py", line 48, in
value = read_value()
File "/clamms/calc_window_mappability.py", line 33, in read_value
return (line[:i1], int(line[i1+1:i2]), int(line[i2+1:i3]), float(line[i3+1:-1]))
ValueError: could not convert string to float: 'id-1\t0.000000'

then i have tried:
cat output.bed | /clamms/calc_window_mappability.py map.bed

and again it failed:

Traceback (most recent call last):
File "/clamms/calc_window_mappability.py", line 48, in
value = read_value()
File "/clamms/calc_window_mappability.py", line 33, in read_value
return (line[:i1], int(line[i1+1:i2]), int(line[i2+1:i3]), float(line[i3+1:-1]))
ValueError: could not convert string to float: 'id-1\t0.000000'

head output.bed:

1 56376 56496 1:56376-56496 88 0.440
1 803701 803821 1:803701-803821 81 0.405
1 901455 901575 1:901455-901575 105 0.525
1 1086596 1086716 1:1086596-1086716 128 0.640
1 1196140 1196260 1:1196140-1196260 75 0.375
1 1294978 1295098 1:1294978-1295098 132 0.660
1 1395285 1395405 1:1395285-1395405 110 0.550
1 1495143 1495263 1:1495143-1495263 123 0.615
1 1594509 1594629 1:1594509-1594629 119 0.595
1 1696267 1696387 1:1696267-1696387 67 0.335

head map.bed:

1 0 10000 id-1 0.000000
1 10000 10036 id-2 0.001805
1 10036 10037 id-3 0.029136
1 10037 10038 id-4 0.001805
1 10038 10039 id-5 0.036515
1 10039 10041 id-6 0.125988
1 10041 10043 id-7 0.001805
1 10043 10044 id-8 0.095346
1 10044 10045 id-9 0.077152
1 10045 10046 id-10 0.095346

what's wrong ?
thank you --