ERROR: coverage file and models file must be for exactly the same set of genomic windows

[tpjones15]

Hello,

I have run into the following error when running the call_cnv program:

call_cnv sample1.norm.cov.bed models.bed
ERROR: coverage file and models file must be for exactly the same set of genomic windows

Whilst this would appear to be a self explanatory fix, I don't see how it could be the case as I've only produced a single windows.bed file in this instance and all three files (sample1.norm.cov.bed, models.bed and windows.bed) have the same number of lines in support of this (202,931).

If anyone has any suggestions I'd be very grateful,

Thanks,
Tom

[Z-Zen]

In case someone stumbles on this error, your input files *.norm.cov.bed and models.bed must contain chr. Try to remove them with sed 's/chr//g' and relaunch the command.