Error executing CLAMMS: ERROR: more than 4096 CNVs detected!

[lakhujanivijay]

ERROR: more than 4096 CNVs detected!
The reference panel must not be a good fit for this sample.
Note: CLAMMS is not meant to be used with cancer samples.

I could not understand what is this error. Can you please help ?

[lakhujanivijay]

It has to do something with this:

#define CNV_BUF_SIZE 4096

clamms/call_cnv.c

Line 13 in f486d6b

#define CNV_BUF_SIZE 4096

[katherinef]

I'm guessing there is a maximum number of expected CNVs per sample. In their publications, they seem to call a median of 14 "unfiltered" CNVs per sample. Strangely, I am also getting far more than this (though not as many as 4096). Did you manage to resolve this problem?