The bundled schema for dependabot is missing pre-commit in the package-ecosystem enum https://github.com/python-jsonschema/check-jsonschema/blob/main/src/check_jsonschema/builtin_schemas/vendor/dependabot.json#L648-L680 pre-commit is a supported value according to https://docs.github.com/en/code-security/reference/supply-chain-security/dependabot-options-reference#package-ecosystem- and is included in the schema https://www.schemastore.org/dependabot-2.0.json