[pre-commit.ci] pre-commit autoupdate (#38)

Author: pre-commit-ci[bot]

.pre-commit-config.yaml

@@ -26,21 +26,16 @@ repos:
     rev: v2.2.0
     hooks:
     -   id: setup-cfg-fmt
--   repo: https://github.com/PyCQA/docformatter
-    rev: v1.5.1
-    hooks:
-    -   id: docformatter
-        args: [--in-place, --wrap-summaries, "88", --wrap-descriptions, "88", --blank]
 -   repo: https://github.com/psf/black
-    rev: 22.12.0
+    rev: 23.3.0
     hooks:
     -   id: black
 -   repo: https://github.com/charliermarsh/ruff-pre-commit
-    rev: v0.0.223
+    rev: v0.0.261
     hooks:
       - id: ruff
 -   repo: https://github.com/dosisod/refurb
-    rev: v1.10.0
+    rev: v1.15.0
     hooks:
     -   id: refurb
         args: [--ignore, FURB126]
@@ -59,11 +54,11 @@ repos:
         ]
         args: [--wrap, "88"]
 - repo: https://github.com/codespell-project/codespell
-  rev: v2.2.2
+  rev: v2.2.4
   hooks:
     -   id: codespell
 -   repo: https://github.com/pre-commit/mirrors-mypy
-    rev: 'v0.991'
+    rev: 'v1.2.0'
     hooks:
     -   id: mypy
         args: [

pyproject.toml

@@ -29,6 +29,8 @@ target-version = "py37"
 select = ["ALL"]
 fix = true
 extend-ignore = [
+    "TCH",
+    "TRY",
     # Numpy docstyle
     "D107",
     "D203",
@@ -61,3 +63,15 @@ extend-ignore = [
 
 [tool.ruff.pydocstyle]
 convention = "numpy"
+
+
+[tool.pytest.ini_options]
+# Do not add src since it messes with the loading of pytask-parallel as a plugin.
+testpaths = ["test"]
+markers = [
+    "wip: Tests that are work-in-progress.",
+    "unit: Flag for unit tests which target mainly a single function.",
+    "integration: Flag for integration tests which may comprise of multiple unit tests.",
+    "end_to_end: Flag for tests that cover the whole program.",
+]
+norecursedirs = [".idea", ".tox"]

src/pytask_r/parametrize.py

@@ -10,5 +10,5 @@
 @hookimpl
 def pytask_parametrize_kwarg_to_marker(obj: Any, kwargs: dict[Any, Any]) -> None:
     """Attach parametrized r arguments to the function with a marker."""
-    if callable(obj) and "r" in kwargs:  # noqa: PLR2004
+    if callable(obj) and "r" in kwargs:
         pytask.mark.r(**kwargs.pop("r"))(obj)

tests/test_collect.py

@@ -97,7 +97,7 @@ def test_r(args, kwargs, expectation, expected):
         ),
     ],
 )
-def test_parse_r_mark(
+def test_parse_r_mark(  # noqa: PLR0913
     mark,
     default_options,
     default_serializer,

tests/test_config.py

@@ -8,4 +8,4 @@
 def test_marker_is_configured(tmp_path):
     session = main({"paths": tmp_path})
 
-    assert "r" in session.config["markers"]  # noqa: PLR2004
+    assert "r" in session.config["markers"]

tests/test_execute.py

@@ -36,7 +36,7 @@ def test_pytask_execute_task_setup(monkeypatch):
 @pytest.mark.end_to_end()
 @parametrize_parse_code_serializer_suffix
 @pytest.mark.parametrize("depends_on", ["'in_1.txt'", "['in_1.txt', 'in_2.txt']"])
-def test_run_r_script(
+def test_run_r_script(  # noqa: PLR0913
     runner, tmp_path, parse_config_code, serializer, suffix, depends_on
 ):
     task_source = f"""
@@ -256,4 +256,4 @@ def task_run_r_script():
     result = runner.invoke(cli, [tmp_path.as_posix()])
 
     assert result.exit_code == ExitCode.COLLECTION_FAILED
-    assert "has multiple @pytask.mark.r marks" in result.output  # noqa: PLR2004
+    assert "has multiple @pytask.mark.r marks" in result.output

tox.ini

@@ -1,13 +1,13 @@
 [tox]
 envlist = pytest
-skipsdist = True
-skip_missing_interpreters = True
-whitelist_externals = python
 
 [testenv]
-basepython = python
+usedevelop = true
 
 [testenv:pytest]
+conda_channels =
+    conda-forge
+    nodefaults
 conda_deps =
     pytask >=0.3
     pytask-parallel >=0.3
@@ -22,37 +22,5 @@ conda_deps =
     pytest
     pytest-cov
     pytest-xdist
-conda_channels =
-    conda-forge
-    nodefaults
 commands =
-    pip install --no-deps -e .
     pytest {posargs}
-
-[flake8]
-docstring-convention = numpy
-ignore =
-    D
-    E203  ; ignores whitespace around : which is enforced by Black.
-    W503  ; ignores linebreak before binary operator which is enforced by Black.
-    PT006 ; ignores that parametrizing tests with tuple argument names is preferred.
-    PT023 ; ignores parentheses for marks.
-max-line-length = 88
-warn-symbols =
-    pytest.mark.wip = Remove 'wip' flag for tests.
-    pytest.mark.skip = Remove 'skip' flag for tests.
-
-[pytest]
-addopts = --doctest-modules
-filterwarnings =
-    ignore: the imp module is deprecated in favour of importlib
-    ignore: The (parser|symbol) module is deprecated and will be removed in future
-    ignore: Using or importing the ABCs from 'collections' instead of from
-markers =
-    wip: Tests that are work-in-progress.
-    unit: Flag for unit tests which target mainly a single function.
-    integration: Flag for integration tests which may comprise of multiple unit tests.
-    end_to_end: Flag for tests that cover the whole program.
-norecursedirs =
-    .idea
-    .tox