Implement new interface with pytask v0.2. (#26)

Author: tobiasraabe

.coveragerc

@@ -0,0 +1,5 @@
+[report]
+exclude_lines =
+    pragma: no cover
+    if TYPE_CHECKING.*:
+    \.\.\.

.github/ISSUE_TEMPLATE/bug_report.md

@@ -1,24 +1,21 @@
----
+______________________________________________________________________
 
-name: Bug Report
-about: Create a bug report to help us improve pytask-r
-title: "BUG:"
+name: Bug Report about: Create a bug report to help us improve pytask-r title: "BUG:"
 labels: "bug"
 
----
+______________________________________________________________________
 
 - [ ] I have checked that this issue has not already been reported.
 
 - [ ] I have confirmed this bug exists on the latest version of pytask-r.
 
-- [ ] (optional) I have confirmed this bug exists on the `main` branch of
-  pytask-r.
+- [ ] (optional) I have confirmed this bug exists on the `main` branch of pytask-r.
 
----
+______________________________________________________________________
 
-**Note**: Please read [this
-guide](https://matthewrocklin.com/blog/work/2018/02/28/minimal-bug-reports) detailing
-how to provide the necessary information for us to reproduce your bug.
+**Note**: Please read
+[this guide](https://matthewrocklin.com/blog/work/2018/02/28/minimal-bug-reports)
+detailing how to provide the necessary information for us to reproduce your bug.
 
 #### Code Sample, a copy-pastable example
 

.github/ISSUE_TEMPLATE/documentation.md

@@ -1,11 +1,9 @@
----
+______________________________________________________________________
 
-name: Documentation Improvement
-about: Report wrong or missing documentation
-title: "DOC:"
-labels: "documentation"
+name: Documentation Improvement about: Report wrong or missing documentation title:
+"DOC:" labels: "documentation"
 
----
+______________________________________________________________________
 
 #### Location of the documentation
 

.github/ISSUE_TEMPLATE/enhancement.md

@@ -1,16 +1,14 @@
----
+______________________________________________________________________
 
-name: Enhancement
-about: Suggest an idea for pytask-r
-title: "ENH:"
-labels: "enhancement"
+name: Enhancement about: Suggest an idea for pytask-r title: "ENH:" labels:
+"enhancement"
 
----
+______________________________________________________________________
 
 #### Is your feature request related to a problem?
 
-Provide a description of what the problem is, e.g. "I wish I could use pytask-r
-to do [...]".
+Provide a description of what the problem is, e.g. "I wish I could use pytask-r to do
+\[...\]".
 
 #### Describe the solution you'd like
 

.github/ISSUE_TEMPLATE/question.md

@@ -1,17 +1,15 @@
----
+______________________________________________________________________
 
-name: Submit Question
-about: Ask a general question about pytask-r
-title: "QST:"
-labels: "question"
+name: Submit Question about: Ask a general question about pytask-r title: "QST:" labels:
+"question"
 
----
+______________________________________________________________________
 
 #### Question about pytask-r
 
-**Note**: If you'd still like to submit a question, please read [this guide](
-https://matthewrocklin.com/blog/work/2018/02/28/minimal-bug-reports) detailing how to
-provide the necessary information for us to reproduce your question.
+**Note**: If you'd still like to submit a question, please read
+[this guide](https://matthewrocklin.com/blog/work/2018/02/28/minimal-bug-reports)
+detailing how to provide the necessary information for us to reproduce your question.
 
 ```python
 # Your code here, if applicable

.github/pull_request_template.md

@@ -6,4 +6,4 @@ Provide a description and/or bullet points to describe the changes in this PR.
 
 - [ ] Reference issues which can be closed due to this PR with "Closes #x".
 - [ ] Review whether the documentation needs to be updated.
-- [ ] Document PR in docs/changes.rst.
+- [ ] Document PR in CHANGES.md.

.github/workflows/main.yml

@@ -17,15 +17,14 @@ jobs:
 
   run-tests:
 
-    name: Run tests for ${{ matrix.os }} on ${{ matrix.python-version }} and ${{ matrix.r-version }}
+    name: Run tests for ${{ matrix.os }} on ${{ matrix.python-version }}
     runs-on: ${{ matrix.os }}
 
     strategy:
       fail-fast: false
       matrix:
         os: ['ubuntu-latest', 'macos-latest', 'windows-latest']
         python-version: ['3.7', '3.8', '3.9', '3.10']
-        r-version: ['3.6.3']
 
     steps:
       - uses: actions/checkout@v2
@@ -45,29 +44,15 @@ jobs:
         run: tox -e pytest -- -m "unit or (not integration and not end_to_end)" --cov=./ --cov-report=xml -n auto
 
       - name: Upload coverage report for unit tests and doctests.
-        if: runner.os == 'Linux' && matrix.python-version == '3.9' && matrix.r-version == '3.6.3'
+        if: runner.os == 'Linux' && matrix.python-version == '3.9'
         shell: bash -l {0}
         run: bash <(curl -s https://codecov.io/bash) -F unit -c
 
-      # - name: Run integration tests.
-      #   shell: bash -l {0}
-      #   run: tox -e pytest -- -m integration --cov=./ --cov-report=xml -n auto
-
-      # - name: Upload coverage reports of integration tests.
-      #   if: runner.os == 'Linux' && matrix.python-version == '3.9' && matrix.r-version == '3.6.3'
-      #   shell: bash -l {0}
-      #   run: bash <(curl -s https://codecov.io/bash) -F integration -c
-
       - name: Run end-to-end tests.
         shell: bash -l {0}
         run: tox -e pytest -- -m end_to_end --cov=./ --cov-report=xml -n auto
 
       - name: Upload coverage reports of end-to-end tests.
-        if: runner.os == 'Linux' && matrix.python-version == '3.9' && matrix.r-version == '3.6.3'
+        if: runner.os == 'Linux' && matrix.python-version == '3.9'
         shell: bash -l {0}
         run: bash <(curl -s https://codecov.io/bash) -F end_to_end -c
-
-      - name: Validate codecov.yml
-        if: runner.os == 'Linux' && matrix.python-version == '3.9' && matrix.r-version == '3.6.3'
-        shell: bash -l {0}
-        run: cat codecov.yml | curl --data-binary @- https://codecov.io/validate

.pre-commit-config.yaml

@@ -16,9 +16,6 @@ repos:
     -   id: python-no-eval
     -   id: python-no-log-warn
     -   id: python-use-type-annotations
-    -   id: rst-backticks
-    -   id: rst-directive-colons
-    -   id: rst-inline-touching-normal
     -   id: text-unicode-replacement-char
 -   repo: https://github.com/asottile/pyupgrade
     rev: v2.32.0
@@ -38,11 +35,6 @@ repos:
     rev: 22.3.0
     hooks:
     -   id: black
--   repo: https://github.com/asottile/blacken-docs
-    rev: v1.12.1
-    hooks:
-    -   id: blacken-docs
-        additional_dependencies: [black]
 -   repo: https://github.com/PyCQA/flake8
     rev: 4.0.1
     hooks:
@@ -64,24 +56,30 @@ repos:
             pydocstyle,
             Pygments,
         ]
--   repo: https://github.com/PyCQA/doc8
-    rev: 0.11.1
-    hooks:
-    -   id: doc8
 -   repo: https://github.com/econchick/interrogate
     rev: 1.5.0
     hooks:
     -   id: interrogate
         args: [-v, --fail-under=40, src, tests]
+-   repo: https://github.com/executablebooks/mdformat
+    rev: 0.7.14
+    hooks:
+    -   id: mdformat
+        additional_dependencies: [
+            mdformat-gfm,
+            mdformat-black,
+        ]
+        args: [--wrap, "88"]
 - repo: https://github.com/codespell-project/codespell
   rev: v2.1.0
   hooks:
     -   id: codespell
-        args: [-L unparseable]
 -   repo: https://github.com/mgedmin/check-manifest
     rev: "0.48"
     hooks:
     -   id: check-manifest
+        args: [--no-build-isolation]
+        additional_dependencies: [setuptools-scm, toml]
 -   repo: meta
     hooks:
     -   id: check-hooks-apply

CHANGES.md

@@ -0,0 +1,61 @@
+# Changes
+
+This is a record of all past pytask-r releases and what went into them in reverse
+chronological order. Releases follow [semantic versioning](https://semver.org/) and all
+releases are available on [PyPI](https://pypi.org/project/pytask-r) and
+[Anaconda.org](https://anaconda.org/conda-forge/pytask-r).
+
+## 0.2.0 - 2022-xx-xx
+
+- {pull}`24` removes an unnecessary hook implementation.
+
+## 0.1.1 - 2022-02-08
+
+- {pull}`22` skips concurrent CI builds.
+- {pull}`23` deprecate Python 3.6 and add support for Python 3.10.
+
+## 0.1.0 - 2021-07-22
+
+- {pull}`15` fixes the tests related to changes in pytask.
+- {pull}`16` replaces versioneer with setuptools-scm.
+- {pull}`18` aligns pytask-r with pytask v0.1.0.
+
+## 0.0.9 - 2021-03-05
+
+- {pull}`13` fixes the version number in the release.
+
+## 0.0.8 - 2021-03-03
+
+- {pull}`10` fixes some post-release issues.
+- {pull}`12` add dependencies to `setup.py`.
+
+## 0.0.7 - 2021-02-25
+
+- {pull} `9` publishes pytask-r on PyPI, adds versioneer, and more.
+
+## 0.0.6 - 2021-01-16
+
+- {pull} `7` converts command line arguments automatically to string and removes the
+  `--vanilla` option as the default.
+
+## 0.0.5 - 2020-10-30
+
+- {pull} `5` makes pytask-r work with pytask v0.0.9.
+
+## 0.0.4 - 2020-10-14
+
+- {pull} `4` fixes `pytask_collect_task_teardown` with non-R tasks and releases 0.0.4.
+
+## 0.0.3 - 2020-10-04
+
+- {pull} `2` fixes marker description and adds some changes to the readme.
+- {pull} `3` check for exit code equal to 0, preparation for pytask v0.0.7, and releases
+  v0.0.3.
+
+## 0.0.2 - 2020-08-14
+
+- {pull} `1` includes some minor changes like fixing the missing version variable.
+
+## 0.0.1 - 2020-07-22
+
+- Release v0.0.1.