Hello PICRUSt2 team,
I am using PICRUSt2 v2.6.2 to generate KO abundances from 16S data. I have a question regarding the output tables:
Is there a recommended way to produce a TSV that includes full KEGG pathway hierarchy levels (level 1, 2, 3) for each KO directly from the pipeline?
The current output (pred_metagenome_unstrat.tsv) lists KO abundances but does not include hierarchy annotations.
I am also attaching screenshots of the output for clarity.
Any guidance on how to obtain a KO abundance table with full pathway hierarchy would be greatly appreciated.
Thank you!
