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---
title: "Office of Water Policy and Ecosystems Restoration (OWPER) Technical Github Webpage <img src='dep_logo.png' align='right' height = '100'/>"
output:
html_document:
includes:
after_body: footer.html
---
***
Site Update `r Sys.Date()`
Want to contribute to this page? Create an issue [here](https://github.com/owper-tech/owper-tech.github.io/issues/new/choose) (**must have a Github account**).
# {.tabset}
## Reporting
### Daily Reports
- Daily Estuary Salinity Report | [Report](http://publicfiles.dep.state.fl.us/owp/SalinityReports/SalinityUpdate.html){target="_blank"} | [Source](https://github.com/owper-tech/owper-EstuarySalinityUpdate){target="_blank"} |
- Daily Everglades Water Level Report | [Report](http://publicfiles.dep.state.fl.us/owp/SalinityReports/WaterLevelUpdate.html){target="_blank"} | [Source](https://github.com/owper-tech/owper-WaterLevelUpdate){target="_blank"} |
- Daily System Report Tables | [Report](http://publicfiles.dep.state.fl.us/owp/SalinityReports/DailySystemReport_Table.html){target="_blank"} | [Source](https://github.com/owper-tech/owper-SystemReport){target="_blank"} |
### Trends
- Everglades Structure WQ Trends <mark>Coming Soon</mark>
- Everglades Marsh WQ Trends |
[Report](https://owper-tech.github.io/EvergladesMarshTrends/){target="_blank"} | [Source](https://github.com/owper-tech/EvergladesMarshTrends){target="_blank"} |
- Lake Okeechobee WQ Trends <mark>Coming Soon</mark>
### Other Reports
- South Dade Conveyance System Environmental Information | [Report](https://owper-tech.github.io/SouthDade_WQ/){target="_blank"} | [Source](https://github.com/owper-tech/SouthDade_WQ){target="_blank"} |
- Caloosahatchee River Estuary Water Quality Tracking | [Report](https://owper-tech.github.io/CREWQ_tracking/){target="_blank"} | [Source](https://github.com/owper-tech/CREWQ_tracking){target="_blank"} |
- Lake Okeechobee WQ Evaluation | [Report](https://owper-tech.github.io/LakeO_WQ/WBIDEval/index.html){target="_blank"} | [Source](https://github.com/owper-tech/LakeO_WQ){target="_blank"} |
<br>
- South Florida Environmental Report
- [SFWMD page](https://www.sfwmd.gov/science-data/scientific-publications-sfer){target="_blank"}
- TP Rule Assessment | [Report](https://owper-tech.github.io/EvergladesTPRule/){target="_blank"} | [Source](https://github.com/owper-tech/EvergladesTPRule){target="_blank"} |
<br>
- Everglades Technical Oversight Committee
- [SFWMD page](https://www.sfwmd.gov/our-work/toc){target="_blank"}
- Appendix A Update
- Shark River Slough | [Report](https://owper-tech.github.io/reports/SRSUpdate.html){target="_blank"} | Source |
- Taylor Slough and Coastal Basins | Report | Source |
- Appendix B Update | [Report](https://owper-tech.github.io/reports/LNWRUpdate.html){target="_blank"} | Source |
## Respositories
- [github.com/owper-tech](https://github.com/owper-tech/){target="_blank"}: Github organization
- [owper-tech.github.io](https://github.com/owper-tech/owper-tech.github.io){target="_blank"}: files for this Github website
- Western Everglades Restoration Planning - Water Quality | [link](https://github.com/SwampThingPaul/WERP_WQ){target="_blank"} |
- LOSOM Estuary Nutrient Loading Model Repository | [link](https://github.com/SwampThingPaul/LOSOM_ENLM){target="_blank"} |
- BBSEER - Water Quality | [link](https://github.com/SwampThingPaul/BBSEER_WQ){target="_blank"} |
## Presentations/Tech Report
<!--
- **Everglades Technical Oversight Committee Related**
- Appendix A deviation (reanalysis by Paul Julian) | [Link](./docs/SettlementAgreement/Derivation.html){target="_blank"} |
- Discharge Uncertainty Re-Analysis | [Link](./docs/SettlementAgreement/SRS_Uncertainty_V3.html){target="_blank"} | [Walkers (2018)](./docs/SettlementAgreement/SRS_error_analysis_www_draft_09-06-2018.pdf){target="_blank"} |
-->
- **WERP**
- USACE project webpage [https://www.saj.usace.army.mil/WERP/](https://www.saj.usace.army.mil/WERP/){target="_blank"}
- Numeric Interpretation of Narrative Standards | [Cover Letter](./docs/WERP/FDEP WERP WQ WhitePaper Transmittal Letter FINAL 071117.pdf){target="_blank"}; [Report](./docs/WERP/FDEP WERP WQ WhitePaper_FINAL 071117.pdf){target="_blank"} | [Source](https://github.com/SwampThingPaul/WERP_WQ){target="_blank"} |
- **LOSOM**
* USACE project webpage [https://www.saj.usace.army.mil/LOSOM/](https://www.saj.usace.army.mil/LOSOM/){target="_blank"}
* DRAFT - Estuary Nutrient Loading Model (Caloosahatchee Estuary) | [link](https://owper-tech.github.io/slides/LOSOM/ENLM/Julian_LOSOM_ENLM#1){target="_blank"} | [Source](https://github.com/SwampThingPaul/LOSOM_ENLM){target="_blank"} | [Addendum Presentation](https://owper-tech.github.io/slides/LOSOM/ENLM/Julian_LOSOM_CRE_ENLM_ad1#1){target="_blank"} |
* DRAFT - Estuary Nutrient Loading Model (St Lucie Estuary) | [link](https://owper-tech.github.io/slides/LOSOM/ENLM/Julian_LOSOM_SLE_ENLM#1){target="_blank"} | [Source](https://github.com/SwampThingPaul/LOSOM_ENLM){target="_blank"} |
- **BBSEER**
* USACE project webpage [https://www.saj.usace.army.mil/BBSEER/](https://www.saj.usace.army.mil/BBSEER/){target="_blank"}
* Project Specific OFW and NNC information [link](https://swampthingecology.org/slides/BBSEER/BBSEER_OFW_map.html){target="_blank"} | [Source](https://github.com/SwampThingPaul/BBSEER_WQ){target="_blank"} |
* Water quality level planning targets (structures) | link | Source |
<!-- presentation https://owper-tech.github.io/slides/BBSEER/BBSEER_WQPlanTarget#1 -->
<!-- source repo https://github.com/SwampThingPaul/BBSEER_WQ -->
## Resources
* [TBEP technical github](https://tbep-tech.github.io/){target="_blank"}
### *Resources from TBEP page*
#### *R Lessons & Tutorials*
* [Software Carpentry: **R for Reproducible Scientific Analysis**](http://data-lessons.github.io/gapminder-R/){target="_blank"}
* [Data Carpentry: **Geospatial Workshop**](https://datacarpentry.org/geospatial-workshop/){target="_blank"}
* [Data Carpentry: **R for Data Analysis and Visualization of Ecological Data**](http://www.datacarpentry.org/R-ecology-lesson/){target="_blank"}
* [Data Carpentry: **Data Organization in Spreadsheets**](http://www.datacarpentry.org/spreadsheet-ecology-lesson/){target="_blank"}
* [**RStudio Webinars**, many topics](https://www.rstudio.com/resources/webinars/){target="_blank"}
* [R For Cats: **Basic introduction site, with cats!**](http://rforcats.net/){target="_blank"}
* [Topical cheatsheets from **RStudio**, also viewed from the help menu](http://www.rstudio.com/resources/cheatsheets/){target="_blank"}
* [Cheatsheet from CRAN of **base R functions**](http://cran.r-project.org/doc/contrib/Short-refcard.pdf){target="_blank"}
* [Totally awesome **R-related artwork** by Allison Horst](https://github.com/allisonhorst/stats-illustrations){target="_blank"}
* [**Color reference** PDF with text names](http://www.stat.columbia.edu/~tzheng/files/Rcolor.pdf){target="_blank"}, [**Color cheatsheet** PDF from NCEAS](https://www.nceas.ucsb.edu/sites/default/files/2020-04/colorPaletteCheatsheet.pdf){target="_blank"}
#### *R eBooks/Courses*
* [Jenny Bryan's **Stat545.com**](http://stat545.com/){target="_blank"}
* [Garrett Grolemund and Hadley Wickham's **R For Data Science**](http://r4ds.had.co.nz/){target="_blank"}
* [Chester Ismay and Albert Y. Kim's **Modern DiveR**](https://ismayc.github.io/moderndiver-book/){target="_blank"}
* [Julia Silge and David Robinson **Text Mining with R**](http://tidytextmining.com/){target="_blank"}
* [Hadley Wickham's **Advanced R**](http://adv-r.had.co.nz/){target="_blank"}
* [Hadley Wickham's **R for Data Science**](https://r4ds.had.co.nz){target="_blank"}
* [Yihui Xie **R Markdown: The Definitive Guide**](https://bookdown.org/yihui/rmarkdown/){target="_blank"}
* [Winston Chang **R Graphics Cookbook**](http://www.cookbook-r.com/){target="_blank"}
* [Wegman et al. **Remote Sensing and GIS for Ecologists: Using Open Source Software**](http://book.ecosens.org/RSEbook/){target="_blank"}
* [Lovelace et al. **Geocomputation with R**](https://geocompr.robinlovelace.net/){target="_blank"}
* [Edszer Pebesma and Roger Bivand **Spatial Data Science**](https://keen-swartz-3146c4.netlify.app/index.html){target="_blank"}
#### *Git/Github*
* [Jenny Bryan's **Happy Git and Github for the useR**](http://happygitwithr.com/){target="_blank"}
* [Coding Club **Intro to Github**](https://ourcodingclub.github.io/2017/02/27/git.html){target="_blank"}