fix: reduce CID scoreTol default from 0.001 to 1e-5

ms609 · ms609 · commit aaa7f48134b9 · 2026-03-26T09:30:56.000Z
MCI absolute values scale with tree size, so 0.001 was too aggressive
for larger trees. 1e-5 is well above floating-point noise while
preserving sensitivity to real improvements.
diff --git a/R/InfoConsensus.R b/R/InfoConsensus.R
@@ -278,7 +278,7 @@ InfoConsensus <- function(trees,
     nThreads = nThreads,
     screeningK = screeningK,
     screeningTolerance = screeningTolerance,
-    scoreTol = .NullOr(ctrl[["scoreTol"]], 0.001),
+    scoreTol = .NullOr(ctrl[["scoreTol"]], 1e-5),
     plateauReps = .NullOr(ctrl[["plateauReps"]], 3L)
   )
   

Original file line number	Diff line number	Diff line change
`@@ -278,7 +278,7 @@ InfoConsensus <- function(trees,`
`278`	`278`	`nThreads = nThreads,`
`279`	`279`	`screeningK = screeningK,`
`280`	`280`	`screeningTolerance = screeningTolerance,`
`281`		`- scoreTol = .NullOr(ctrl[["scoreTol"]], 0.001),`
	`281`	`+ scoreTol = .NullOr(ctrl[["scoreTol"]], 1e-5),`
`282`	`282`	`plateauReps = .NullOr(ctrl[["plateauReps"]], 3L)`
`283`	`283`	`)`
`284`	`284`