Clustal will still run but it will truncate headers to 127 characters.
I think the simplest way to handle it is to warn the user that they have headers longer than those accepted by clustal.
In the long run, a solution could be to have pasv write out short IDs for the files that go into the alignment then write out the real ID in the signatures file.
Clustal will still run but it will truncate headers to 127 characters.
I think the simplest way to handle it is to warn the user that they have headers longer than those accepted by clustal.
In the long run, a solution could be to have pasv write out short IDs for the files that go into the alignment then write out the real ID in the signatures file.