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<!DOCTYPE html>
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<title>trelliscope R function reference</title>
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<p class="myHeader">trelliscope R function reference</p>
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<li class='nav-header'>Contents</li> <li class="active">
<a target="_self" class="nav-not-header" href="#packagemain">Package Info</a>
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<li class="">
<a target="_self" class="nav-not-header" href="#adddisplay">addDisplay</a>
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<li class="">
<a target="_self" class="nav-not-header" href="#airplane">airplane</a>
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<a target="_self" class="nav-not-header" href="#applycogfn">applyCogFn</a>
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<a target="_self" class="nav-not-header" href="#batting">batting</a>
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<a target="_self" class="nav-not-header" href="#bssetup">bsSetup</a>
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<a target="_self" class="nav-not-header" href="#cog">cog</a>
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<li class="">
<a target="_self" class="nav-not-header" href="#cogncol">cogNcol</a>
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<a target="_self" class="nav-not-header" href="#cogdisplayhref">cogDisplayHref</a>
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<a target="_self" class="nav-not-header" href="#coghref">cogHref</a>
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<a target="_self" class="nav-not-header" href="#cogloessrmse">cogLoessRMSE</a>
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<li class="">
<a target="_self" class="nav-not-header" href="#cogmean">cogMean</a>
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<li class="">
<a target="_self" class="nav-not-header" href="#cogrange">cogRange</a>
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<a target="_self" class="nav-not-header" href="#cogscagnostics">cogScagnostics</a>
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<a target="_self" class="nav-not-header" href="#deploytoshinyapps">deployToShinyApps</a>
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<a target="_self" class="nav-not-header" href="#dfcogconn">dfCogConn</a>
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<a target="_self" class="nav-not-header" href="#encodepng">encodePNG</a>
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<a target="_self" class="nav-not-header" href="#getdisplay">getDisplay</a>
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<a target="_self" class="nav-not-header" href="#tohash">toHash</a>
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<a target="_self" class="nav-not-header" href="#listdisplays">listDisplays</a>
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<a target="_self" class="nav-not-header" href="#makedisplay">makeDisplay</a>
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<a target="_self" class="nav-not-header" href="#makepng">makePNG</a>
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<a target="_self" class="nav-not-header" href="#makesploddata">makeSplodData</a>
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<a target="_self" class="nav-not-header" href="#makestatehash">makeStateHash</a>
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<a target="_self" class="nav-not-header" href="#cogpre">cogPre</a>
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<a target="_self" class="nav-not-header" href="#nbdisplay">nbDisplay</a>
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<a target="_self" class="nav-not-header" href="#nbdisplaylist">nbDisplayList</a>
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<a target="_self" class="nav-not-header" href="#printdisplayobj">print.displayObj</a>
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<a target="_self" class="nav-not-header" href="#removedisplay">removeDisplay</a>
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<a target="_self" class="nav-not-header" href="#setlims">setLims</a>
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<a target="_self" class="nav-not-header" href="#splod">splod</a>
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<a target="_self" class="nav-not-header" href="#splodcogfn">splodCogFn</a>
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<a target="_self" class="nav-not-header" href="#splodpanelfn">splodPanelFn</a>
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<a target="_self" class="nav-not-header" href="#synclocaldata">syncLocalData</a>
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<li class="">
<a target="_self" class="nav-not-header" href="#trelliscope">trelliscope</a>
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<a target="_self" class="nav-not-header" href="#typeset">typeset</a>
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<a target="_self" class="nav-not-header" href="#validatestate">validateState</a>
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<a target="_self" class="nav-not-header" href="#vdbconn">vdbConn</a>
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<a target="_self" class="nav-not-header" href="#view">view</a>
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<a target="_self" class="nav-not-header" href="#viewnotebook">viewNotebook</a>
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<a target="_self" class="nav-not-header" href="#webconn">webConn</a>
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<a target="_self" class="nav-not-header" href="#websync">webSync</a>
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<h3>Trelliscope</h3>
<p><strong>Author:</strong> Ryan Hafen</p>
<p><strong>Version:</strong> 0.8.0.2</p>
<p><strong>Date:</strong> 2014-11-03</p>
<p><strong>License:</strong> BSD_3_clause + file LICENSE</p>
<h4>Description</h4>
<p>Trelliscope provides a way to create, organize, and view
multi-panel displays, a collection of which is called a visualization
database (VDB). This package provides a mechanism for extending the ideas
of Trellis Display to easily generate and organize plots, providing a
dynamic viewer for tiling panels of a display across the screen and paging
through them. There is also a mechanism to generate built-in or
user-defined "cognostic" metrics for each panel of a display , and the
viewer has the ability to sort or filter the pages based on these
cognostics. This is useful for large multi-panel displays where it is not
possible to view each panel, allowing only panels with interesting features
to be presented. This package also provides a way to meaningfully organize
and present these displays in a "lab notebook".</p>
<h4>Depends</h4>
<p>
R (>= 2.15.1),
base,
datadr (>= 0.7.3),
lattice (>= 0.20-23),
ggplot2</p>
<h4>Suggests</h4>
<p>
Cairo,
testthat (>= 0.8.1),
roxygen2 (>= 4.0.0),
scagnostics,
shinyapps</p>
</div>
<!-- addDisplay -->
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<h3 class="fref_title">Add a Display to a VDB</h3>
<h4>Description</h4>
Add an R display (lattice, ggplot, base R) to a visualization database (VDB)
<h4>Usage</h4>
<pre><code class="language-r"><div>addDisplay(p, name, group = "common", desc = "", height = 800, width = 800, conn = getOption("vdbConn"))</div></code></pre>
<h4>Arguments</h4>
<dl>
<dt>p</dt>
<dd>an R plot object (lattice or ggplot) or an expression containing code to create a plot</dd>
<dt>name</dt>
<dd>the name of the display (no spaces or special characters)</dd>
<dt>group</dt>
<dd>the group the display belongs to (displays are organized into groups). Defaults to "common"</dd>
<dt>desc</dt>
<dd>a description of the display (used in the viewer and in notebooks)</dd>
<dt>height</dt>
<dd>TODO</dd>
<dt>width</dt>
<dd>TODO</dd>
<dt>conn</dt>
<dd>VDB connection info, typically stored in options("vdbConn") at the beginning of a session, and not necessary to specify here if a valid "vdbConn" object exists</dd>
</dl>
<h4>Author</h4>
Ryan Hafen
</div>
<!-- airplane -->
<div class="tab-pane" id="airplane">
<h3 class="fref_title">Airplane TODO</h3>
<h4>Description</h4>
Airplane details TODO
<h4>Usage</h4>
<pre><code class="language-r"><div>data(airplane)</div></code></pre>
<h4>Format</h4>
<p>A data frame with 1479 rows and 47 variables</p>
<h4>Details</h4>
<p><ul>
<li> dat_ams. : POSIXct, format: "2010-06-28 16:25:21" "2010-06-28 16:25:34" ...
</li>
<li> org. : num 9.26 13.29 12.13 12.36 10.11 ...
</li>
<li> NO3. : num 0.449 0.589 0.536 0.57 0.457 ...
</li>
<li> SO4. : num 0.115 0.193 0.232 0.307 0.197 ...
</li>
<li> NH4. : num 0.126 0.229 0.224 0.179 0.172 ...
</li>
<li> CHL. : num 0.01119 0.01748 0.00607 0.03346 0.00683 ...
</li>
<li> org_err. : num 0.111 0.117 0.116 0.116 0.115 ...
</li>
<li> NO3_err. : num 0.0172 0.0181 0.0177 0.0182 0.0175 ...
</li>
<li> SO4_err. : num 0.0222 0.0244 0.0252 0.0253 0.025 ...
</li>
<li> NH4_err. : num 0.0331 0.0331 0.0331 0.0332 0.0331 ...
</li>
<li> CHl_err. : num 0.0124 0.0122 0.0123 0.0123 0.0123 ...
</li>
<li> latitude. : num 38.7 38.7 38.7 38.7 38.7 ...
</li>
<li> longitude. : num -121 -121 -121 -121 -121 ...
</li>
<li> altitude. : num 354 369 385 393 388 ...
</li>
<li> static_p. : num 968 966 964 963 964 ...
</li>
<li> altitude_p. : num 327 341 356 365 360 ...
</li>
<li> static_t. : num 28.4 28.7 28.6 28.5 28.8 ...
</li>
<li> potential_t. : num 31.3 31.7 31.7 31.7 32 ...
</li>
<li> dewpt. : num 14.1 13.5 13.4 12.9 11.1 ...
</li>
<li> RH. : num 41.6 39.3 39.3 38.5 33.5 ...
</li>
<li> h2o_MF. : num 10.54 10.11 10.05 9.8 8.68 ...
</li>
<li> windspd. : num 3.45 3.9 4.14 4.12 4.7 4.54 3.42 3.1 2.98 2.64 ...
</li>
<li> winddir. : num 330 325 320 318 317 ...
</li>
<li> cpc_3025. : num 5508 3915 4037 3969 3567 ...
</li>
<li> cpc_3010. : num 483 352 364 348 314 ...
</li>
<li> ozone. : num 46.8 44.3 45.2 45.5 40.4 ...
</li>
<li> co. : num 109.7 97.6 101.2 103.1 91.8 ...
</li>
<li> so2. : num NA NA NA NA NA NA NA 0.6 0.465 0.644 ...
</li>
<li> no. : num 0.3074 0.0514 0.1456 0.1593 0.115 ...
</li>
<li> no2. : num 1.745 0.358 0.573 0.688 0.8 ...
</li>
<li> noy. : num 5.25 3.48 4.09 4.02 3.53 ...
</li>
<li> mz_33. : num 16.7 14.6 14.4 14.1 11.1 ...
</li>
<li> mz_42. : num 0.1024 0.1176 0.1333 0.0916 0.0407 ...
</li>
<li> mz_45. : num 5.98 5.22 5.19 4.84 5.07 ...
</li>
<li> mz_59. : num 8.49 7.71 6.85 7.08 6.46 ...
</li>
<li> mz_69. : num 1.589 0.811 0.791 0.904 0.911 ...
</li>
<li> mz_71. : num 3.88 3.65 3.35 2.94 2.74 ...
</li>
<li> mz_79. : num 0.417 0.243 0.192 0.261 0.178 ...
</li>
<li> mz_93. : num 0.446 0.571 0.454 0.218 0.185 ...
</li>
<li> mz_107. : num 0.686 0.869 0.661 0.78 0.265 ...
</li>
<li> mz_137. : num 0.519 0.452 0.093 0.353 0.348 ...
</li>
<li> mz_43. : num 8.52 8.3 8.17 8.38 6.87 ...
</li>
<li> mz_61. : num 5.39 5.13 5.1 5.17 4.96 ...
</li>
<li> mz_87. : num 0.302 0.235 0.418 0.298 0.364 ...
</li>
<li> mz69_71. : num 5.47 4.46 4.14 3.84 3.65 ...
</li>
<li> leg_flag. : int 13 13 13 13 3 3 3 3 3 3 ...
</li>
<li> nox. : num 2.053 0.41 0.718 0.847 0.915 ...
</li>
</ul></p>
<p></p>
</div>
<!-- applyCogFn -->
<div class="tab-pane" id="applycogfn">
<h3 class="fref_title">Apply Cognostics Function to a Key-Value Pair</h3>
<h4>Description</h4>
Apply cognostics function to a key-value pair
<h4>Usage</h4>
<pre><code class="language-r"><div>applyCogFn(cogFn, kvSubset, conn)</div></code></pre>
<h4>Arguments</h4>
<dl>
<dt>cogFn</dt>
<dd>cognostics function</dd>
<dt>kvSubset</dt>
<dd>key-value pair</dd>
<dt>conn</dt>
<dd>TODO</dd>
</dl>
<h4>See also</h4>
<code><a href='#cog'>cog</a></code>, <code><a href='#makedisplay'>makeDisplay</a></code>
<h4>Author</h4>
Ryan Hafen
</div>
<!-- batting -->
<div class="tab-pane" id="batting">
<h3 class="fref_title">Batting Title TODO</h3>
<h4>Description</h4>
Batting details TODO
<h4>Usage</h4>
<pre><code class="language-r"><div>data(batting)</div></code></pre>
<h4>Format</h4>
<p>A data frame with 1406 rows and 22 variables</p>
<h4>Details</h4>
<p><ul>
<li> playerID. : Factor w/ 17908 levels "aardsda01","aaronha01",..: 1 6 34 34 37 40 40 41 46 51 ...
</li>
<li> yearID. : int 2012 2012 2012 2012 2012 2012 2012 2012 2012 2012 ...
</li>
<li> stint. : int 1 1 1 2 1 1 2 1 1 1 ...
</li>
<li> teamID. : Factor w/ 149 levels "ALT","ANA","ARI",..: 93 58 71 72 66 45 96 16 116 94 ...
</li>
<li> lgID. : Factor w/ 6 levels "AA","AL","FL",..: 2 4 2 4 2 2 2 2 2 4 ...
</li>
<li> G. : int 1 37 8 92 22 26 1 69 153 45 ...
</li>
<li> AB. : int NA 7 24 195 70 0 NA 0 607 0 ...
</li>
<li> R. : int NA 0 1 28 5 0 NA 0 84 0 ...
</li>
<li> H. : int NA 1 5 48 18 0 NA 0 137 0 ...
</li>
<li> X2B. : int NA 0 3 8 2 0 NA 0 22 0 ...
</li>
<li> X3B. : int NA 0 0 1 1 0 NA 0 2 0 ...
</li>
<li> HR. : int NA 0 0 3 1 0 NA 0 12 0 ...
</li>
<li> RBI. : int NA 0 5 19 15 0 NA 0 50 0 ...
</li>
<li> SB. : int NA 0 0 6 0 0 NA 0 13 0 ...
</li>
<li> CS. : int NA 0 0 2 0 0 NA 0 3 0 ...
</li>
<li> BB. : int NA 0 2 35 2 0 NA 0 59 0 ...
</li>
<li> SO. : int NA 3 5 51 13 0 NA 0 124 0 ...
</li>
<li> IBB. : int NA 0 0 3 0 0 NA 0 7 0 ...
</li>
<li> HBP. : int NA 0 0 0 1 0 NA 0 0 0 ...
</li>
<li> SH. : int NA 0 0 0 0 0 NA 0 1 0 ...
</li>
<li> SF. : int NA 0 1 0 1 0 NA 0 1 0 ...
</li>
<li> GIDP. : int NA 1 1 6 1 0 NA 0 3 0 ...
</li>
<li> price. price in US dollars (\$326--\$18,823)
</li>
</ul></p>
<p></p>
</div>
<!-- bsSetup -->
<div class="tab-pane" id="bssetup">
<h3 class="fref_title">Set Up Web Notebook Using Bootstrap</h3>
<h4>Description</h4>
Set up a Twitter Boostrap template for a notebook to be typeset with knitr. This function should be called at the beginning of a .Rmd file. If you use <code><a href='newNotebook.html'>newNotebook</a></code> to initialize a notebook .Rmd file, this will already be there.
<h4>Usage</h4>
<pre><code class="language-r"><div>bsSetup(pageTitle = "test", title = "test", author = "author name", toc = TRUE, css = NULL)</div></code></pre>
<h4>Arguments</h4>
<dl>
<dt>pageTitle</dt>
<dd>the text to display on the title bar of the web browser</dd>
<dt>title</dt>
<dd>the text to display on the header of the web page</dd>
<dt>author</dt>
<dd>author</dd>
<dt>toc</dt>
<dd>should a table-of-contents be included?</dd>
<dt>css</dt>
<dd>path to additional style sheets, if desired</dd>
</dl>
<h4>References</h4>
<p>http://twitter.github.com/bootstrap/</p>
<h4>See also</h4>
<code><a href='#newnotebook'>newNotebook</a></code>, <code><a href='#typeset'>typeset</a></code>
<h4>Author</h4>
Ryan Hafen
</div>
<!-- cog -->
<div class="tab-pane" id="cog">
<h3 class="fref_title">Create a Cognostics Object</h3>
<h4>Description</h4>
Create a cognostics object. To be used inside of the function passed to the <code>cogFn</code> argument of <code><a href='makeDisplay.html'>makeDisplay</a></code> for each cognostics value to be computed for each subset.
<h4>Usage</h4>
<pre><code class="language-r"><div>cog(val = NULL, desc = "", group = "common", type = NULL, defLabel = FALSE, defActive = TRUE, filterable = TRUE)</div></code></pre>
<h4>Arguments</h4>
<dl>
<dt>val</dt>
<dd>a scalar value (numeric, characer, date, etc.)</dd>
<dt>desc</dt>
<dd>a description for this cognostic value</dd>
<dt>group</dt>
<dd>optional categorization of the cognostic for organizational purposes</dd>
<dt>type</dt>
<dd>the desired type of cognostic you would like to compute (see details)</dd>
<dt>defLabel</dt>
<dd>should this cognostic be used as a panel label in the viewer by default?</dd>
<dt>defActive</dt>
<dd>should this cognostic be active (available for sort / filter / sample) by default?</dd>
<dt>filterable</dt>
<dd>should this cognostic be filterable? Default is <code>TRUE</code>. It can be useful to set this to <code>FALSE</code> if the cognostic is categorical with many unique values and is only desired to be used as a panel label.</dd>
</dl>
<h4>Value</h4>
<p>object of class "cog"</p>
<h4>Details</h4>
<p>Different types of cognostics can be specified through the <code>type</code> argument that will effect how the user is able to interact with those cognostics in the viewer. This can usually be ignored because it will be inferred from the implicit data type of <code>val</code>. But there are special types of cognostics, such as geographic coordinates and relations (not implemented) that can be specified as well. Current possibilities for <code>type</code> are "key", "integer", "numeric", "factor", "date", "time", "geo", "rel", "hier", "href".</p>
<h4>See also</h4>
<code><a href='#makedisplay'>makeDisplay</a></code>, <code><a href='#cogrange'>cogRange</a></code>, <code><a href='#cogmean'>cogMean</a></code>, <code><a href='#cogscagnostics'>cogScagnostics</a></code>, <code><a href='#cogloessrmse'>cogLoessRMSE</a></code>
<h4>Author</h4>
Ryan Hafen
</div>
<!-- cogNcol -->
<div class="tab-pane" id="cogncol">
<h3 class="fref_title">Methods for Cognostics Connections</h3>
<h4>Description</h4>
Methods for Cognostics Connections
<h4>Usage</h4>
<pre><code class="language-r"><div>cogNcol(x, ...)</div>
<div>cogNrow(x, ...)</div>
<div>cogNames(x, ...)</div>
<div>getCogData(x, rowIdx, colIdx, ...)</div>
<div>oldGetCurCogDat(cogDF, flt, ordering, colIndex, verbose, ...)</div></code></pre>
<h4>Arguments</h4>
<dl>
<dt>x</dt>
<dd>object</dd>
<dt>...</dt>
<dd>other objects passed onto generic methods</dd>
<dt>rowIdx</dt>
<dd>TODO</dd>
<dt>colIdx</dt>
<dd>TODO</dd>
<dt>cogDF</dt>
<dd>TODO</dd>
<dt>flt</dt>
<dd>TODO</dd>
<dt>ordering</dt>
<dd>TODO</dd>
<dt>colIndex</dt>
<dd>TODO</dd>
<dt>verbose</dt>
<dd>TODO</dd>
</dl>
<h4>Note</h4>
<p>These methods are used mainly by the trelliscope viewer and therefore must be exported. They should never need to be used by an analyst.</p>
</div>
<!-- cogDisplayHref -->
<div class="tab-pane" id="cogdisplayhref">
<h3 class="fref_title">DisplayHref Cognostic</h3>
<h4>Description</h4>
Create href that points to another trelliscope display with optional state
<h4>Usage</h4>
<pre><code class="language-r"><div>cogDisplayHref(displayName, displayGroup = NULL, state = NULL, label = "link", desc = "display link", group = "common", target = "_blank", defLabel = FALSE, defActive = FALSE, filterable = FALSE)</div></code></pre>
<h4>Arguments</h4>
<dl>
<dt>displayName</dt>
<dd>the name of the display</dd>
<dt>displayGroup</dt>
<dd>the group the display belongs to</dd>
<dt>state</dt>
<dd>if specified, this tells the viewer the default parameter settings (such as layout, sorting, filtering, etc.) to use when the display is viewed (see <code><a href='#validatestate'>validateState</a></code> for details)</dd>
<dt>label</dt>
<dd>label of the href</dd>
<dt>desc,group,defLabel,defActive,filterable</dt>
<dd>arguments passed to <code><a href='#cog'>cog</a></code></dd>
<dt>target</dt>
<dd>value to be used for the <code>target</code> attribute of the <code>a</code> html tag - default is "_blank" which will open the link in a new window</dd>
</dl>
<h4>Value</h4>
<p>a hash string</p>
<h4>See also</h4>
<code><a href='#validatestate'>validateState</a></code>, <code><a href='#coghref'>cogHref</a></code>
<h4>Author</h4>
Ryan Hafen
</div>
<!-- cogHref -->
<div class="tab-pane" id="coghref">
<h3 class="fref_title">Href Cognostic</h3>
<h4>Description</h4>
Create href to be used as cognostics in a trelliscope display.
<h4>Usage</h4>
<pre><code class="language-r"><div>cogHref(x, label = "link", desc = "link", group = "common", target = "_blank", defLabel = FALSE, defActive = FALSE, filterable = FALSE)</div></code></pre>
<h4>Arguments</h4>
<dl>
<dt>x</dt>
<dd>URL to link to</dd>
<dt>label</dt>
<dd>label of the href</dd>
<dt>desc,group,defLabel,defActive,filterable</dt>
<dd>arguments passed to <code><a href='#cog'>cog</a></code></dd>
<dt>target</dt>
<dd>value to be used for the <code>target</code> attribute of the <code>a</code> html tag - default is "_blank" which will open the link in a new window</dd>
</dl>
<h4>See also</h4>
<code><a href='#cog'>cog</a></code>
<h4>Author</h4>
Ryan Hafen
</div>
<!-- cogLoessRMSE -->
<div class="tab-pane" id="cogloessrmse">
<h3 class="fref_title">Compute RMSE of Loess Fit Cognostic</h3>
<h4>Description</h4>
Compute RMSE of loess fit as a cognostic to be used as cognostics in a trelliscope display.
<h4>Usage</h4>
<pre><code class="language-r"><div>cogLoessRMSE(..., desc = "RMSE of residuals from loess fit", group = "common", defLabel = FALSE, defActive = TRUE, filterable = TRUE)</div></code></pre>
<h4>Arguments</h4>
<dl>
<dt>desc,group,defLabel,defActive,filterable</dt>
<dd>arguments passed to <code><a href='#cog'>cog</a></code></dd>
<dt>...</dt>
<dd>arguments to be passed to <code>link{loess}</code>, such as the formula, data, smoothing parameters, etc.</dd>
</dl>
<h4>See also</h4>
<code><a href='#cog'>cog</a></code>
<h4>Author</h4>
Ryan Hafen
</div>
<!-- cogMean -->
<div class="tab-pane" id="cogmean">
<h3 class="fref_title">Compute Mean Cognostic</h3>
<h4>Description</h4>
Compute mean to be used as cognostics in a trelliscope display.
<h4>Usage</h4>
<pre><code class="language-r"><div>cogMean(x, desc = "mean", group = "common", defLabel = FALSE, defActive = TRUE, filterable = TRUE)</div></code></pre>
<h4>Arguments</h4>
<dl>
<dt>x</dt>
<dd>numeric vector from which to compute the mean</dd>
<dt>desc,group,defLabel,defActive,filterable</dt>
<dd>arguments passed to <code><a href='#cog'>cog</a></code></dd>
</dl>
<h4>See also</h4>
<code><a href='#cog'>cog</a></code>
<h4>Author</h4>
Ryan Hafen
</div>
<!-- cogRange -->
<div class="tab-pane" id="cogrange">
<h3 class="fref_title">Compute Range Cognostic</h3>
<h4>Description</h4>
Compute range to be used as cognostics in a trelliscope display.
<h4>Usage</h4>
<pre><code class="language-r"><div>cogRange(x, desc = "range (max - min)", group = "common", defLabel = FALSE, defActive = TRUE, filterable = TRUE)</div></code></pre>
<h4>Arguments</h4>
<dl>
<dt>x</dt>
<dd>numeric vector from which to compute the range</dd>
<dt>desc,group,defLabel,defActive,filterable</dt>
<dd>arguments passed to <code><a href='#cog'>cog</a></code></dd>
</dl>
<h4>See also</h4>
<code><a href='#cog'>cog</a></code>
<h4>Author</h4>
Ryan Hafen
</div>
<!-- cogScagnostics -->
<div class="tab-pane" id="cogscagnostics">
<h3 class="fref_title">Compute Scagnostics</h3>
<h4>Description</h4>
Compute list of scagnostics (see <code><a href='http://www.inside-r.org/packages/cran/scagnostics/docs/scagnostics'>scagnostics</a></code>) to be used as cognostics in a trelliscope display.
<h4>Usage</h4>
<pre><code class="language-r"><div>cogScagnostics(x, y, group = "scagnostics", defLabel = FALSE, defActive = TRUE, filterable = TRUE)</div></code></pre>
<h4>Arguments</h4>
<dl>
<dt>x</dt>
<dd>vector of the x-axis data for a scatterplot</dd>
<dt>y</dt>
<dd>vector of the y-axis data for a scatterplot</dd>
<dt>group,defLabel,defActive,filterable</dt>
<dd>arguments passed to <code><a href='#cog'>cog</a></code></dd>
</dl>
<h4>See also</h4>
<code><a href='#cog'>cog</a></code>
<h4>Author</h4>
Ryan Hafen
</div>
<!-- deployToShinyApps -->
<div class="tab-pane" id="deploytoshinyapps">
<h3 class="fref_title">Deploy VDB to shinyapps.io</h3>
<h4>Description</h4>
Deploy VDB to shinyapps.io
<h4>Usage</h4>
<pre><code class="language-r"><div>deployToShinyApps(vdbConn = getOption("vdbConn"), appName = NULL, account = NULL, redeploy = TRUE, size = NULL, instances = NULL, quiet = FALSE)</div></code></pre>
<h4>Arguments</h4>
<dl>
<dt>vdbConn</dt>
<dd>VDB connection settings</dd>
<dt>appName</dt>
<dd>name of application (app will be available at https://[account].shinyapps.io/[appName]/) - if not supplied, will use the name of VDB connection</dd>
<dt>account</dt>
<dd>passed to <code>shinyapps::configureApp</code></dd>
<dt>redeploy</dt>
<dd>passed to <code>shinyapps::configureApp</code></dd>
<dt>size</dt>
<dd>passed to <code>shinyapps::configureApp</code></dd>
<dt>instances</dt>
<dd>passed to <code>shinyapps::configureApp</code></dd>
<dt>quiet</dt>
<dd>passed to <code>shinyapps::configureApp</code></dd>
</dl>
<h4>Details</h4>
<p>If you do not have a shinyapps.io account and have not set your account info, first visit here prior to calling this function: <a href = 'http://shiny.rstudio.com/articles/#shinyapps'>http://shiny.rstudio.com/articles/#shinyapps</a>.</p>
<h4>Author</h4>
Ryan Hafen
<code><a href='syncLocalData.html'>syncLocalData</a></code>
</div>
<!-- dfCogConn -->
<div class="tab-pane" id="dfcogconn">
<h3 class="fref_title">Initiate Data Frame Cognostics Connection</h3>
<h4>Description</h4>
Initiate data frame cognostics connection
<h4>Usage</h4>
<pre><code class="language-r"><div>dfCogConn()</div></code></pre>
<h4>Value</h4>
<p>"cogConn" object of class "dfCogConn"</p>
<h4>Note</h4>
<p>This should never need to be called explicitly. It is the default mechanism for storing cognostics in <code><a href='#makedisplay'>makeDisplay</a></code>.</p>
<h4>See also</h4>
<code><a href='#makedisplay'>makeDisplay</a></code>
<h4>Author</h4>
Ryan Hafen
</div>
<!-- encodePNG -->
<div class="tab-pane" id="encodepng">
<h3 class="fref_title">base64 Encoding of a .png File</h3>
<h4>Description</h4>
base64 Encoding of a .png File
<h4>Usage</h4>
<pre><code class="language-r"><div>encodePNG(plotLoc)</div></code></pre>
<h4>Arguments</h4>
<dl>
<dt>plotLoc</dt>
<dd>TODO</dd>
</dl>
</div>
<!-- getDisplay -->
<div class="tab-pane" id="getdisplay">
<h3 class="fref_title">Retrieve Display Object from VDB</h3>
<h4>Description</h4>
Retrieve a display object from a VDB.
<h4>Usage</h4>
<pre><code class="language-r"><div>getDisplay(name, group = NULL, conn = getOption("vdbConn"))</div></code></pre>
<h4>Arguments</h4>
<dl>
<dt>name</dt>
<dd>the name of the display</dd>
<dt>group</dt>
<dd>the group of the display</dd>
<dt>conn</dt>
<dd>VDB connection info, typically stored in options("vdbConn") at the beginning of a session, and not necessary to specify here if a valid "vdbConn" object exists</dd>
</dl>