Hi,
For my case, i created a virtual environment that has python 2.7.18 , installed tredparse in this virtual environment and git clone the tredparse repository. I have the following questions regarding the tool:
-
I understand that using the tredprepare.py, we can add additional str regions. Would your tool work with repeats that are dinucleotide repeats?
-
After running the tredprepare.py, i opened the .json file to fill in the additional details:

Could i check which are optional and what is the difference between motif and repeat?
-
Lastly, i tried tred.py tests/samples.csv --workdir work but there was an error:

Thank you !
Hi,
For my case, i created a virtual environment that has python 2.7.18 , installed tredparse in this virtual environment and git clone the tredparse repository. I have the following questions regarding the tool:
I understand that using the tredprepare.py, we can add additional str regions. Would your tool work with repeats that are dinucleotide repeats?
After running the tredprepare.py, i opened the .json file to fill in the additional details:

Could i check which are optional and what is the difference between motif and repeat?
Lastly, i tried

tred.py tests/samples.csv --workdir workbut there was an error:Thank you !