EHH not calculated

[shreyashruti]

Hi
I am not able to calculate EHH for a few loci.
The EHH output files get generated but the file shows:

EHH not calculated (<MAF)
iHS: -nan
MAF: 0

How to rectify this error? @prenderj @camaclean

[camaclean]

Hi,

Use --minmaf 0.

-Colin

[camaclean]

I've set the default to 0 for EHH in Pull #43, rather than 0.05 as in ihs scans.

[shreyashruti]

Hi
I tried. But the same error.
EHH is still not calculated even after changing the minmaf to 0.0
What could possibly be wrong?
@camaclean

[camaclean]

If the MAF is 0, then either ehh_0 or ehh_1 is undefined. There is no EHH decay for a nonexistent core. A nan is expected in this case as a core with a MAF of 0 is not a valid input.