Tutorial- og Layout update (#210)

* Updated tutorials, restructured index to EasyDiffraction-layout, moved dictionary and calculator into 'tutorials.rst'

* Updated based on review of  pull request

* Removing output from jupyter notebooks

---------

Co-authored-by: Mads_Pufin <mads-1803@hotmail.com>
Co-authored-by: henrikjacobsenfys <henrik.jacobsen.fys@gmail.com>

Author: 3 people

docs/src/calculators.rst

@@ -7,11 +7,7 @@
 
    installation
    usage
-   sample/sample
-   calculators
-   model/model
    tutorials/tutorials
-   dictionary
    contributing
    authors
    api/api

docs/src/dictionay.rst

@@ -1,15 +1,16 @@
-Assemblies
+Creating multilayers and surfactant layers
 ==========
 
-:py:mod:`easyreflectometry` is designed to be used with a broad range of different assemblies.
-These assemblies offer flexibility for the user and enable more powerful analysis by making chemical and pysical constraints available with limited code. 
+:py:mod:`easyreflectometry` is designed to be used with a broad range of different assemblies.  
+Assemblies are collective layers behaving as a single object, for example, a multilayer or a surfactant layer.
+These assemblies offer flexibility for the user and enable more powerful analysis by making chemical and physical constraints available with limited code. 
 In this page, we will document the assemblies that are available with simple examples of the constructors that exist.
 Full API documentation is also available for the :py:mod:`easyreflectometry.sample.assemblies` module.
 
 :py:class:`Multilayer`
 ----------------------
 
-This assembly should be used for a series of layers that, for whatever reason, should be thought of as a single object. 
+This assembly should be used for a series of layers that should be thought of as a single object. 
 For example, in the `simple fitting tutorial`_ this assembly type is used to combine the silicon and silicon dioxide layer that as formed into a single object. 
 All of the separate layers in these objects will be fitted individually, i.e. there is no constraints present, however, there is some cognative benefit to grouping layers together. 
 

docs/src/index.rst

@@ -1,4 +1,4 @@
-Layers
+Defining Layers
 ======
 
 Similar to a range of different `materials`_, there are a few different ways that a layer can be defined in :py:mod:`easyreflectometry`.

docs/src/tutorials/advancedfitting/multi_contrast.ipynb

@@ -1,9 +1,9 @@
-Materials
+Defining materials
 =========
 
 In order to support a wide range of applications (and to build complex `assemblies`_) there are a few different types of material that can be utilised in :py:mod:`easyreflectometry`. 
-These can include constraints or enabel the user to define the material based on chemical or physical properties. 
-Full API documentation for the :py:mod:`easyreflectometry.sample.elements.material` mdoule is also available, but here we will give some simple uses for them. 
+These can include constraints or enable the user to define the material based on chemical or physical properties. 
+Full API documentation for the :py:mod:`easyreflectometry.sample.elements.material` module is also available, but here we will give some simple uses for them. 
 
 :py:class:`Material`
 --------------------

docs/src/tutorials/sample/multiple.ort …c/tutorials/advancedfitting/multiple.ortdocs/src/tutorials/sample/multiple.ort renamed to docs/src/tutorials/advancedfitting/multiple.ort docs/src/tutorials/sample/multiple.ort renamed to docs/src/tutorials/advancedfitting/multiple.ort

@@ -1,4 +1,4 @@
-Model
+Creating a model
 =====
 
 The main component of an experiment in :py:mod:`easyreflectometry` is the :py:class:`Model`. 

docs/src/sample/assemblies_library.rst …c/tutorials/basic/assemblies_library.rstdocs/src/sample/assemblies_library.rst renamed to docs/src/tutorials/basic/assemblies_library.rst docs/src/sample/assemblies_library.rst renamed to docs/src/tutorials/basic/assemblies_library.rst

@@ -1,4 +1,4 @@
-Sample
+Basic
 ======
 
 The :py:mod:`easyreflectometry` package is focused on making easy to use functionality for specific modelling approaches.