⬆️ Update pre-commit hooks

* Switch to SHA values instead of git tags
* Upgrade to isort 5
* Use black config for isort

Author: veit

.pre-commit-config.yaml

@@ -10,7 +10,7 @@ ci:
 
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v6.0.0
+    rev: 3e8a8703264a2f4a69428a0aa4dcb512790b2c8c # v6.0.0
     hooks:
     - id: check-json
       types: [file]  # override `types: [json]`
@@ -24,43 +24,43 @@ repos:
     - id: end-of-file-fixer
     - id: trailing-whitespace
   - repo: https://github.com/tox-dev/pyproject-fmt
-    rev: v2.16.2
+    rev: 6e10264313f53d6247a8b1b984f5b5ccf50ba539 # v2.21.0
     hooks:
     - id: pyproject-fmt
   - repo: https://github.com/abravalheri/validate-pyproject
-    rev: v0.25
+    rev: 4b2e70d08cb2ccd26d1fba73588de41c7a5d50b7 # v0.25
     hooks:
     - id: validate-pyproject
   - repo: https://github.com/sphinx-contrib/sphinx-lint
-    rev: v1.0.2
+    rev: c883505f64b59c3c5c9375191e4ad9f98e727ccd # v1.0.2
     hooks:
     - id: sphinx-lint
       types: [rst]
   - repo: https://github.com/pycqa/isort
-    rev: 8.0.1
+    rev: a333737ed43df02b18e6c95477ea1b285b3de15a # 8.0.1
     hooks:
     - id: isort
       additional_dependencies: ["toml"]
       entry: isort --profile=black
       name: isort (python)
   - repo: https://github.com/psf/black-pre-commit-mirror
-    rev: 26.1.0
+    rev: fa505ab9c3e0fedafe1709fd7ac2b5f8996c670d # 26.3.1
     hooks:
     - id: black
   - repo: https://github.com/tonybaloney/perflint
-    rev: 0.8.1
+    rev: 22f831509bc7765ce272ad6fcb99398d86a26a52 # 0.8.1
     hooks:
     - id: perflint
       exclude: ^docs/
   - repo: https://github.com/adamchainz/blacken-docs
-    rev: "1.20.0"
+    rev: fda77690955e9b63c6687d8806bafd56a526e45f # 1.20.0
     hooks:
     - id: blacken-docs
       args: [--line-length=79]
       additional_dependencies:
       - black
   - repo: https://github.com/codespell-project/codespell
-    rev: v2.4.1
+    rev: 2ccb47ff45ad361a21071a7eedda4c37e6ae8c5a # v2.4.2
     hooks:
     - id: codespell
       args: [--toml pyproject.toml]

docs/data-processing/postgresql/db-api.rst

@@ -26,29 +26,20 @@ Connection
 
     Example:
 
-    .. blacken-docs:off
-
     .. code-block:: python
 
         import driver
 
-
-        conn = driver.connect(
-                database="example",
-                host="localhost",
-                port=5432
-                )
+        conn = driver.connect(database="example", host="localhost", port=5432)
         try:
-            # create the cursor
-            # use the cursor
+            cursor = conn.cursor()
+            cursor.execute("SQL-STATEMENT")
         except Exception:
             conn.rollback()
         else:
             conn.commit()
             conn.close()
 
-    .. blacken-docs:on
-
 Cursor
     `Cursor objects <https://peps.python.org/pep-0249/#cursor-objects>`_ are
     used to manage the context of a ``.fetch*()`` method.
@@ -82,12 +73,10 @@ Cursor
     .. code-block:: python
 
         cursor = conn.cursor()
-        cursor.execute(
-            """
+        cursor.execute("""
             SELECT column1, column2
             FROM tableA
-        """
-        )
+        """)
         for column1, column2 in cursor.fetchall():
             print(column1, column2)
 

docs/data-processing/serialisation-formats/toml/pyproject.toml

@@ -1,7 +1,6 @@
 # SPDX-FileCopyrightText: 2022 Veit Schiele
 #
 # SPDX-License-Identifier: BSD-3-Clause
-
 [tool.black]
 line-length = 79
 
@@ -14,6 +13,5 @@ lines_between_types = 1
 multi_line_output = 3
 not_skip = "__init__.py"
 use_parentheses = true
-
 known_first_party = [ "MY_FIRST_MODULE", "MY_SECOND_MODULE" ]
 known_third_party = [ "mpi4py", "numpy", "requests" ]

docs/productive/envs/spack/combinatorial-builds.rst

@@ -169,32 +169,47 @@ Spack provides a ``spec`` syntax for describing custom DAGs:
 
         from spack import *
 
+
         class Dyninst(Package):
-            """API for dynamic binary instrumentation.""”
+            """API for dynamic binary instrumentation."""
+
             homepage = "https://paradyn.org"
 
-            version('8.2.1', 'abf60b7faabe7a2e’, url="http://www.paradyn.org/release8.2/DyninstAPI-8.2.1.tgz")
-            version('8.1.2', 'bf03b33375afa66f’, url="http://www.paradyn.org/release8.1.2/DyninstAPI-8.1.2.tgz")
-            version('8.1.1', 'd1a04e995b7aa709’, url="http://www.paradyn.org/release8.1/DyninstAPI-8.1.1.tgz")
+            version(
+                "8.2.1",
+                "abf60b7faabe7a2e",
+                url="http://www.paradyn.org/release8.2/DyninstAPI-8.2.1.tgz",
+            )
+            version(
+                "8.1.2",
+                "bf03b33375afa66f",
+                url="http://www.paradyn.org/release8.1.2/DyninstAPI-8.1.2.tgz",
+            )
+            version(
+                "8.1.1",
+                "d1a04e995b7aa709",
+                url="http://www.paradyn.org/release8.1/DyninstAPI-8.1.1.tgz",
+            )
 
             depends_on("libelf")
             depends_on("libdwarf")
             depends_on("boost@1.42:")
 
             def install(self, spec, prefix):
-                libelf = spec['libelf'].prefix
-                libdwarf = spec['libdwarf'].prefix
-
-                with working_dir('spack-build', create=True):
-                    cmake('..',
-                        '-DBoost_INCLUDE_DIR=%s' % spec['boost'].prefix.include,
-                        '-DBoost_LIBRARY_DIR=%s' % spec['boost'].prefix.lib,
-                        '-DBoost_NO_SYSTEM_PATHS=TRUE’
-                        *std_cmake_args)
+                libelf = spec["libelf"].prefix
+                libdwarf = spec["libdwarf"].prefix
+
+                with working_dir("spack-build", create=True):
+                    cmake(
+                        "..",
+                        "-DBoost_INCLUDE_DIR=%s" % spec["boost"].prefix.include,
+                        "-DBoost_LIBRARY_DIR=%s" % spec["boost"].prefix.lib,
+                        "-DBoost_NO_SYSTEM_PATHS=TRUE" * std_cmake_args,
+                    )
                     make()
                     make("install")
 
-            @when('@:8.1')
+            @when("@:8.1")
             def install(self, spec, prefix):
                 configure("--prefix=" + prefix)
                 make()
@@ -258,7 +273,7 @@ Spack provides a ``spec`` syntax for describing custom DAGs:
                 mpich: aa4ar6ifj23yijqmdabeakpejcli72t3
               hash: 33hjjhxi7p6gyzn5ptgyes7sghyprujh
               variants: {}
-              version: '1.0'
+              version: "1.0"
             - adept-utils:
               arch: linux-x86_64
               compiler:

docs/productive/git/advanced/bisect.rst

@@ -130,33 +130,29 @@ complicated changes in behaviour. For performance tests, we need a test
 programme that can perform multiple runs and determine the minimum time while
 eliminating possible noise:
 
-.. blacken-docs:off
-
 .. code-block:: python
 
    from subprocess import run
    from time import perf_counter
 
-
    times = []
    for _ in range(10):
        start = perf_counter()
        run(
-           [./perftest, PARAM],
+           "./perftest",
+           PARAM,
            check=True,
            capture_output=True,
        )
        elapsed = perf_counter() - start
        times.append(elapsed)
-   if min(times) > X.0:
+   if min(times) > 2.0:
        print("Too slow")
        raise SystemExit(1)
    else:
        print("Fast enough")
        raise SystemExit(0)
 
-.. blacken-docs:on
-
 The programme executes :samp:`python perftest.py {PARAM}` ten times and measures
 the time for each execution. It then compares the minimum execution time with a
 limit value of ``X`` seconds. If the minimum time is above the limit value, it

docs/workspace/ipython/extensions.rst

@@ -54,19 +54,18 @@ Writing IPython extensions
 An IPython extension is an importable Python module that has special functions
 for loading and unloading:
 
-.. blacken-docs:off
-
 .. code-block:: python
 
     def load_ipython_extension(ipython):
         # The `ipython` argument is the currently active `InteractiveShell`
         # instance, which can be used in any way. This allows you to register
         # new magics or aliases, for example.
+        pass
+
 
     def unload_ipython_extension(ipython):
         # If you want your extension to be unloadable, put that logic here.
-
-.. blacken-docs:on
+        pass
 
 .. seealso::
-    * :label:`defining_magics`
+   * :label:`defining_magics`

pyproject.toml

@@ -1,3 +1,6 @@
+# SPDX-FileCopyrightText: 2020 Veit Schiele
+#
+# SPDX-License-Identifier: BSD-3-Clause
 [project]
 name = "python4datascience"
 version = "24.2.0"
@@ -20,7 +23,7 @@ classifiers = [
 ]
 dependencies = []
 urls."Bug Tracker" = "https://github.com/cusyio/Python4DataScience/issues"
-urls."Homepage" = "https://github.com/cusyio/Python4DataScience/"
+urls.Homepage = "https://github.com/cusyio/Python4DataScience/"
 
 [dependency-groups]
 dev = [
@@ -50,6 +53,9 @@ docs = [
 [tool.setuptools]
 packages = []
 
+[tool.black]
+line-length = 79
+
 [tool.codespell]
 skip = "*.csv, *.html, *.pdf, *.ipynb, ./docs/_build/*, ./styles/*"
 ignore-words-list = "AAS, ans, bund, comit, fo, Groth, nd, Ned, ORE, ore, Redict, redict, registr, reStructedText, splitted"