metawrap quant_bins module how to use for a few samples?

[ShevchenkoAlla]

Hello!
I don't understand how to use quant_bins module for a few samples.

In your tutorial it's only one folder for bins...
how can it be used for a few samples when the names of bins are just numbers, and they can be the same for defferent samples?
Also there is one assembly, what if I can't merge my samples (they are different and need to be analised separatly), how can I use this mode for a few sample to get one heatmap for all samples?
There is no mentioning about using this script for multiple samples.

"
metawrap quant_bins -b BIN_REFINEMENT/metawrap_50_10_bins -o QUANT_BINS -a ASSEMBLY/final_assembly.fasta CLEAN_READS/ERR*fastq
"

I would appreciare any help!
Thanks,
Best,
Alla

[yqy6611]

Just list all the FASTQ files at the end of this command.

[ShevchenkoAlla]

Just list all the FASTQ files at the end of this command.

Ok,
But what about bins list?