First line indentation

[jvwong]

I get the first line indented

    ### ============ 2. Download =========
### File location defaults to '~/GDCData'
GDCdownload(query = query,
            method = "client")

with the line numbers

  {% highlight r %}
    {% github_sample jvwong/docker_enrichment_workflow_gdc/blob/01442e4397c036c65da74563aa633f45d9a8117d/src/scripts/get_data.R 29 32 %}
  {% endhighlight %}

[bwillis]

Sorry super log wait to get to this, but I did finally end up going through the issues here. The current behavior is to remove the minimum common indentation across the lines. How does the sample you pasted differ from the original?