There was a problem creating your schedule. Aborting mission!

[nizardrou]

Encountered this error when trying to submit a workflow which was validated by biox.
[2017/09/26 17:23:19] Loaded plugin Dummy [2017/09/26 17:23:19] Parsing input file [2017/09/26 17:23:21] There was a problem creating your schedule. Aborting mission!

Whether in --dr or real submission mode.

Location,
/scratch/cz21/Chip_seq_Mouse
Command,
hpcrunner.pl submit_jobs --infile NCB-234-chipseq.sh --project NCB-234-chipseq
YML config,
/scratch/cz21/Chip_seq_Mouse/chipseq-noPeaks-deeptools2-mouse10.yml

[jerowe]

The job 'picardbamindex2' depends upon 'picardbamindex2'

It doesn't give you a warning message about that? It should...

[nizardrou]

I see! My mistake, I thought it would be something like this, but in previous versions it gave me a warning, not the case this time.

…

On 28 Sep 2017 10:17 am, "Jillian Rowe" ***@***.***> wrote: The job 'picardbamindex2' depends upon 'picardbamindex2' It doesn't give you a warning message about that? It should... — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#29 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AINH4T7OSBbZh3jBsqoffWl_5kuzWw28ks5smzoHgaJpZM4PkPWK> .

[jerowe]

It should give an explicit error about jobs depending on themselves. Circular dependencies are a bit harder and on the 3.3.0 milestone

…

On Sep 28, 2017 9:21 AM, "nizardrou" ***@***.***> wrote: I see! My mistake, I thought it would be something like this, but in previous versions it gave me a warning, not the case this time. On 28 Sep 2017 10:17 am, "Jillian Rowe" ***@***.***> wrote: > The job 'picardbamindex2' depends upon 'picardbamindex2' > > It doesn't give you a warning message about that? It should... > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub > <#29# issuecomment-332738672>, > or mute the thread > <https://github.com/notifications/unsubscribe- auth/AINH4T7OSBbZh3jBsqoffWl_5kuzWw28ks5smzoHgaJpZM4PkPWK> > . > — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#29 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AFTFRobPPZvMW0OSbKPXeQI_V6oAGsdkks5smzrWgaJpZM4PkPWK> .