We want to remove the mzTab output from proteomicsLFQ and ProteinQuantifier in favor of qpx. These are the steps: - [ ] Test the current qpx implementation for both pipelines in OpenMS. - [ ] Refine qpx to convert from OpenMS + quantms (TMT & proteomicsLFQ) -> qpx - [ ] Check that all the PSMs features, metadata , versions, and proteins are released. - [ ] Release OpenMS binary version - [ ] Perform a PR. This feature is a precondition for releasing the next version of quantms.
We want to remove the mzTab output from proteomicsLFQ and ProteinQuantifier in favor of qpx. These are the steps:
This feature is a precondition for releasing the next version of quantms.