updated the POM

Author: arahman

RDT1.5/rdt/pom.xml

@@ -138,6 +138,33 @@
                     </archive>
                 </configuration>
             </plugin>
+            <plugin>
+                <!-- Build an executable JAR -->
+                <groupId>org.apache.maven.plugins</groupId>
+                <artifactId>maven-assembly-plugin</artifactId>
+                <version>3.0.0</version>
+                <configuration>
+                    <descriptorRefs>
+                        <descriptorRef>jar-with-dependencies</descriptorRef>
+                    </descriptorRefs>
+                    <archive>
+                        <manifest>
+                            <addClasspath>true</addClasspath>
+                            <classpathPrefix>lib/</classpathPrefix>
+                            <mainClass>uk.ac.ebi.aamtool.ReactionDecoder</mainClass>
+                        </manifest>
+                    </archive>
+                </configuration>
+                <executions>
+                    <execution>
+                        <id>make-assembly</id> <!-- this is used for inheritance merges -->
+                        <phase>package</phase> <!-- bind to the packaging phase -->
+                        <goals>
+                            <goal>single</goal>
+                        </goals>
+                    </execution>
+                </executions>
+            </plugin>
             <plugin>
                 <groupId>org.apache.maven.plugins</groupId>
                 <artifactId>maven-compiler-plugin</artifactId>