fix(test): Fix expected results after version bump

Author: blanca-pablos

tests/aignostics/qupath/gui_test.py

@@ -18,18 +18,14 @@
 from aignostics.cli import cli
 from aignostics.qupath import QUPATH_LAUNCH_MAX_WAIT_TIME, QUPATH_VERSION
 from aignostics.utils import __project_name__
-from tests.conftest import assert_notified, normalize_output, print_directory_structure
-from tests.constants_test import (
-    HETA_APPLICATION_ID,
-    HETA_APPLICATION_VERSION,
-    SPOT_0_EXPECTED_CELLS_CLASSIFIED,
-    SPOT_0_EXPECTED_RESULT_FILES,
-    SPOT_0_FILENAME,
-    SPOT_0_FILESIZE,
-    SPOT_0_GS_URL,
-    SPOT_0_HEIGHT,
-    SPOT_0_WIDTH,
-)
+from tests.conftest import (assert_notified, normalize_output,
+                            print_directory_structure)
+from tests.constants_test import (HETA_APPLICATION_ID,
+                                  HETA_APPLICATION_VERSION,
+                                  SPOT_0_EXPECTED_CELLS_CLASSIFIED,
+                                  SPOT_0_EXPECTED_RESULT_FILES,
+                                  SPOT_0_FILENAME, SPOT_0_FILESIZE,
+                                  SPOT_0_GS_URL, SPOT_0_HEIGHT, SPOT_0_WIDTH)
 
 if TYPE_CHECKING:
     from nicegui import ui
@@ -302,7 +298,6 @@ async def test_gui_run_qupath_install_to_inspect(  # noqa: C901, PLR0912, PLR091
         # Check for (1) spot added to QuPath project, (2) heatmaps added, (3) spot annotated
         try:
             project_info = json.loads(output)
-            annotations_total = 0
             spot_found = False
             spot_width = None
             spot_height = None
@@ -329,7 +324,7 @@ async def test_gui_run_qupath_install_to_inspect(  # noqa: C901, PLR0912, PLR091
             ), (
                 f"Expected approximately {SPOT_0_EXPECTED_CELLS_CLASSIFIED[0]} "
                 f"({SPOT_0_EXPECTED_CELLS_CLASSIFIED[1]}% tolerance) annotations in the QuPath results, "
-                f"but found {annotations_total}"
+                f"but found {spot_annotations}"
             )
         except json.JSONDecodeError as e:
             pytest.fail(f"Failed to parse QuPath inspect output as JSON: {e}\nOutput: {output!r}\n")

tests/constants_test.py

@@ -112,17 +112,17 @@
         SPECIAL_APPLICATION_VERSION = "0.99.0"
 
         SPOT_0_EXPECTED_RESULT_FILES = [
-            ("tissue_qc_segmentation_map_image.tiff", 1540764, 10),
-            ("tissue_qc_geojson_polygons.json", 160668, 10),
-            ("tissue_segmentation_geojson_polygons.json", 853784, 10),
-            ("readout_generation_slide_readouts.csv", 302252, 10),
-            ("readout_generation_cell_readouts.csv", 1472661, 10),
-            ("cell_classification_geojson_polygons.json", 9939791, 10),
-            ("tissue_segmentation_segmentation_map_image.tiff", 2807584, 10),
-            ("tissue_segmentation_csv_class_information.csv", 451, 10),
-            ("tissue_qc_csv_class_information.csv", 284, 10),
+            ("tissue_qc_segmentation_map_image.tiff", 1642856, 10),
+            ("tissue_qc_geojson_polygons.json", 259955, 10),
+            ("tissue_segmentation_geojson_polygons.json", 887003, 10),
+            ("readout_generation_slide_readouts.csv", 303217, 10),
+            ("readout_generation_cell_readouts.csv", 1658344, 10),
+            ("cell_classification_geojson_polygons.json", 11218951, 10),
+            ("tissue_segmentation_segmentation_map_image.tiff", 2945078, 10),
+            ("tissue_segmentation_csv_class_information.csv", 452, 10),
+            ("tissue_qc_csv_class_information.csv", 285, 10),
         ]
-        SPOT_0_EXPECTED_CELLS_CLASSIFIED = (35160, 10)
+        SPOT_0_EXPECTED_CELLS_CLASSIFIED = (39798, 10)
 
         SPOT_1_EXPECTED_RESULT_FILES = [
             ("tissue_qc_segmentation_map_image.tiff", 469040, 10),