chore(deps): update pandas requirement from <3,>=2.3.3 to >=2.3.3,<4 (#396)

* chore(deps): update pandas requirement from <3,>=2.3.3 to >=2.3.3,<4

Updates the requirements on [pandas](https://github.com/pandas-dev/pandas) to permit the latest version.
- [Release notes](https://github.com/pandas-dev/pandas/releases)
- [Commits](pandas-dev/pandas@v2.3.3...v3.0.0)

---
updated-dependencies:
- dependency-name: pandas
  dependency-version: 3.0.0
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>

* test(application): add --force to mapping validation integration tests to prevent health check timeout

The two tests testing invalid mapping formats were calling `run execute`
without `--force`, causing `_abort_if_system_unhealthy()` to make a
network call before reaching the argument validation. On slower CI
runners (Python 3.11) this exceeded the 10-second test timeout.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix: apply auto-fixes from pre-commit hooks (remove duplicate __all__ entries, del style, uv.lock update)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Helmut Hoffer von Ankershoffen né Oertel <helmut@aignostics.com>
Co-authored-by: Helmut Hoffer von Ankershoffen <helmuthva@googlemail.com>
Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>

Author: 3 people

pyproject.toml

@@ -106,7 +106,7 @@ dependencies = [
     "loguru>=0.7.3,<1",
     "openslide-bin>=4.0.0.10,<5",
     "openslide-python>=1.4.3,<2",
-    "pandas>=2.3.3,<3",
+    "pandas>=2.3.3,<4",
     "platformdirs>=4.3.2,<5",
     "procrastinate>=3.5.3",
     "fastparquet>=2025.12.0,<2026.0.0; python_version < '3.14'",

src/aignostics/platform/__init__.py

@@ -112,14 +112,10 @@
     "CLIENT_ID_INTERACTIVE_STAGING",
     "CLIENT_ID_INTERACTIVE_TEST",
     "DEFAULT_CPU_PROVISIONING_MODE",
-    "DEFAULT_CPU_PROVISIONING_MODE",
     "DEFAULT_FLEX_START_MAX_RUN_DURATION_MINUTES",
     "DEFAULT_GPU_PROVISIONING_MODE",
-    "DEFAULT_GPU_PROVISIONING_MODE",
-    "DEFAULT_GPU_TYPE",
     "DEFAULT_GPU_TYPE",
     "DEFAULT_MAX_GPUS_PER_SLIDE",
-    "DEFAULT_MAX_GPUS_PER_SLIDE",
     "DEFAULT_NODE_ACQUISITION_TIMEOUT_MINUTES",
     "DEVICE_URL_DEV",
     "DEVICE_URL_PRODUCTION",
@@ -132,7 +128,6 @@
     "LIST_APPLICATION_RUNS_MAX_PAGE_SIZE",
     "LIST_APPLICATION_RUNS_MIN_PAGE_SIZE",
     "NOT_YET_IMPLEMENTED",
-    "NOT_YET_IMPLEMENTED",
     "REDIRECT_URI_DEV",
     "REDIRECT_URI_PRODUCTION",
     "REDIRECT_URI_STAGING",
@@ -167,7 +162,6 @@
     "RunOutput",
     "RunSdkMetadata",
     "RunState",
-    "RunState",
     "RunTerminationReason",
     "SchedulingMetadata",
     "Service",

tests/aignostics/application/cli_test.py

@@ -1146,6 +1146,7 @@ def test_cli_run_execute_invalid_mapping_format(runner: CliRunner, tmp_path: Pat
             str(tmp_path),
             "--mapping",
             ".*\\.tiff:staining_method:H&E",  # Wrong: colon instead of equals
+            "--force",  # Skip health check; we're testing argument validation only
         ],
     )
     assert result.exit_code != 0
@@ -1167,6 +1168,7 @@ def test_cli_run_execute_invalid_regex_pattern(runner: CliRunner, tmp_path: Path
             str(tmp_path),
             "--mapping",
             "*.tiff:staining_method=H&E",  # Wrong: glob pattern, not regex
+            "--force",  # Skip health check; we're testing argument validation only
         ],
     )
     assert result.exit_code != 0

tests/aignostics/system/service_test.py

@@ -101,7 +101,7 @@ def test_get_cpu_freq_info_handles_missing_cpu_freq() -> None:
     had_cpu_freq = hasattr(psutil, "cpu_freq")
     original: Any = getattr(psutil, "cpu_freq", None)
     if had_cpu_freq:
-        delattr(psutil, "cpu_freq")
+        del psutil.cpu_freq
     try:
         result = Service._get_cpu_freq_info()
     finally: