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fix: fix file extension for TopoRoot preview image
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src/images/toporoot-pipeline.PNG renamed to src/images/toporoot-pipeline.png

File renamed without changes.

‎src/tools.html‎

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<!DOCTYPE HTML>
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<!--
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Verti by HTML5 UP
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html5up.net | @ajlkn
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Free for personal and commercial use under the CCA 3.0 license (html5up.net/license)
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-->
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<html lang="en">
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<head>
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<title>Topp Lab</title>
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<meta charset="utf-8" />
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<meta name="viewport" content="width=device-width, initial-scale=1, user-scalable=no" />
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<link rel="stylesheet" href="assets/css/main.css" />
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</head>
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<body class="is-preload no-sidebar">
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<div id="page-wrapper">
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<!-- Header -->
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<div id="header-wrapper">
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<header id="header" class="container">
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<!-- Logo -->
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<div id="logo">
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<h1><a href="index.html">Topp Roots Lab</a></h1>
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<span> </span>
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</div>
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<!-- Nav -->
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<nav id="nav">
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<ul>
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<li><a href="index.html">Welcome</a></li>
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<li><a href="research.html">Root Research</a></li>
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<li><a href="publications.html">Publications</a></li>
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<li class="current">
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<a href="tools.html">Tools & resources</a>
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<ul>
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<li><a href="https://github.com/Topp-Roots-Lab/TopoRoot">TopoRoot</a></li>
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<li><a href="https://github.com/Topp-Roots-Lab/3d-root-crown-analysis-pipeline">3-D Root
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Crown Analysis Pipeline</a></li>
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<li><a href="https://github.com/Topp-Roots-Lab/Gia3D">GiaRoots</a></li>
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<li><a href="https://github.com/Topp-Roots-Lab/timeseries_analysis">Root timeseries
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analysis</a></li>
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</ul>
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</li>
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<li><a href="lab.html">Lab team</a></li>
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<li><a href="join.html">Join us</a></li>
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</ul>
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</nav>
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</header>
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</div>
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<!-- Main -->
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<div id="main-wrapper">
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<div class="container">
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<div class="row gtr-200">
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<div class="col-12 col-12-medium">
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<!-- Sidebar -->
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<div id="sidebar">
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<section class="widget thumbnails">
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<h3>Tools & software</h3>
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<div class="grid">
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<div class="row gtr-50">
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<div class="col-3">
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<h4>TopoRoot </h4> A method for computing hierarchy and fine-grained traits
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of maize roots from X-ray CT images [github]
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</div>
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<div class="col-9"><a href="https://github.com/Topp-Roots-Lab/TopoRoot"
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class="image fit"><img src="images/toporoot-pipeline.png" alt="" /></a>
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</div>
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<div class="col-3">
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<h4>3-D Root Crown Analysis Pipeline</h4> Pipeline for segmentation of root
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crowns excavated from field and imaged using Xray CT [github]
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</div>
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<div class="col-9"><a
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href="https://github.com/Topp-Roots-Lab/3d-root-crown-analysis-pipeline"
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class="image fit"><img src="images/toporoot-pipeline.png" alt="" /></a>
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</div>
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<div class="col-3">
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<h4>GiaRoots </h4> Root3D skeleton trait extraction[github]
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</div>
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<div class="col-9"><a href="https://github.com/Topp-Roots-Lab/Gia3D"
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class="image fit"><img src="images/toporoot-pipeline.png" alt="" /></a>
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</div>
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<div class="col-3">
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<h4>Root timeseries analysis </h4> R scripts to analyze and visualize root
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traits over time from DynamicRoots-generated files [github]
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</div>
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<div class="col-9"><a
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href="https://github.com/Topp-Roots-Lab/timeseries_analysis"
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class="image fit"><img src="images/toporoot-pipeline.png" alt="" /></a>
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</div>
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</div>
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</div>
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</section>
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</div>
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</div>
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</div>
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</div>
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</div>
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<!-- Footer -->
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<div id="footer-wrapper">
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<footer id="footer" class="container">
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<div class="row">
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<div class="col-9 col-6-medium col-12-small">
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<!-- Links -->
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<section class="widget links">
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<h3>Site map</h3>
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<ul class="style2">
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<li><a href="index.html">Home</a></li>
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<li><a href="research.html">Research</a></li>
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<li><a href="publications.html">Publications</a></li>
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<li><a href="tools.html">Tools & resources</a></li>
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<li><a href="lab.html">Lab members</a></li>
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<li><a href="https://www.google.com/maps/dir/?api=1&destination=38.674333,-90.3971893">Find
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us</a></li>
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<li><a href="join.html">Join us</a></li>
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</ul>
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</section>
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</div>
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<div class="col-3 col-6-medium col-12-small">
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<!-- Contact -->
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<section class="widget contact last">
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<h3>Contact</h3>
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<ul>
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<li><a href="https://twitter.com/RootDevo" class=" icon brands fa-twitter"><span
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class="label">Twitter</span></a></li>
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<li><a href="mailto:CTopp@danforthcenter.org" class="icon brands fa-telegram"><span
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class="label">Email</span></a></li>
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<li><a href="https://www.google.com/maps/dir/?api=1&destination=38.674333,-90.3971893"
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class="icon brands fa-safari"><span class="label">Address</span></a></li>
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<li><a href="https://scholar.google.com/citations?user=-L6lz1IAAAAJ"
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class="icon brands fa-google"><span class="label">Google scholar</span></a></li>
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<li><a href="https://github.com/Topp-Roots-Lab/marcusdgriff.github.io"
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class="icon brands fa-github"><span class="label">Github</span></a></li>
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</ul>
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</section>
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</div>
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</div>
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<div class="row">
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<div class="col-12">
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<div id="copyright">
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<ul class="menu">
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<li>&copy; Christopher Topp [All rights reserved]</li>
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<li>designed using Bootstrap 4.0</li>
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<li>hosted on <i class="fab fa-github"></i></li>
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<li>Source code available <a
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href="https://github.com/Topp-Roots-Lab/marcusdgriff.github.io">here</a></li>
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<li>and maintained by the lab</li>
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<li>Design: <a href="https://html5up.net">HTML5 UP</a></li>
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</ul>
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</div>
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</div>
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</div>
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</footer>
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</div>
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</div>
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<!-- Scripts -->
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<script src="assets/js/jquery.min.js"></script>
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<script src="assets/js/jquery.dropotron.min.js"></script>
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<script src="assets/js/browser.min.js"></script>
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<script src="assets/js/breakpoints.min.js"></script>
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<script src="assets/js/util.js"></script>
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<script src="assets/js/main.js"></script>
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</body>
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1+
<!DOCTYPE HTML>
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<!--
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Verti by HTML5 UP
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html5up.net | @ajlkn
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Free for personal and commercial use under the CCA 3.0 license (html5up.net/license)
6+
-->
7+
<html lang="en">
8+
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<head>
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<title>Topp Lab</title>
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<meta charset="utf-8" />
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<meta name="viewport" content="width=device-width, initial-scale=1, user-scalable=no" />
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<link rel="stylesheet" href="assets/css/main.css" />
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</head>
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<body class="is-preload no-sidebar">
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<div id="page-wrapper">
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<!-- Header -->
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<div id="header-wrapper">
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<header id="header" class="container">
22+
23+
<!-- Logo -->
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<div id="logo">
25+
<h1><a href="index.html">Topp Roots Lab</a></h1>
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<span> </span>
27+
</div>
28+
29+
<!-- Nav -->
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<nav id="nav">
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<ul>
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<li><a href="index.html">Welcome</a></li>
33+
<li><a href="research.html">Root Research</a></li>
34+
<li><a href="publications.html">Publications</a></li>
35+
<li class="current">
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<a href="tools.html">Tools & resources</a>
37+
<ul>
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<li><a href="https://github.com/Topp-Roots-Lab/TopoRoot">TopoRoot</a></li>
39+
<li><a href="https://github.com/Topp-Roots-Lab/3d-root-crown-analysis-pipeline">3-D Root
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Crown Analysis Pipeline</a></li>
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<li><a href="https://github.com/Topp-Roots-Lab/Gia3D">Gia3D</a></li>
42+
<li><a href="https://github.com/Topp-Roots-Lab/timeseries_analysis">Root timeseries
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analysis</a></li>
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</ul>
45+
</li>
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<li><a href="lab.html">Lab team</a></li>
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<li><a href="join.html">Join us</a></li>
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</ul>
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</nav>
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</header>
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</div>
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<!-- Main -->
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<div id="main-wrapper">
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<div class="container">
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<div class="row gtr-200">
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<div class="col-12 col-12-medium">
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<!-- Sidebar -->
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<div id="sidebar">
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<section class="widget thumbnails">
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<h3>Tools & software</h3>
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<div class="grid">
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<div class="row gtr-50">
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<div class="col-3">
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<h4>TopoRoot</h4>
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<p> method for computing hierarchy and fine-grained traits
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of maize roots from X-ray CT images [github]</p>
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</div>
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<div class="col-9"><a href="https://github.com/Topp-Roots-Lab/TopoRoot"
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class="image fit"><img src="images/toporoot-pipeline.png" alt="" /></a>
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</div>
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<div class="col-3">
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<h4>3-D Root Crown Analysis Pipeline</h4>
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<p>Pipeline for segmentation of root
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crowns excavated from field and imaged using Xray CT [github]</p>
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</div>
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<div class="col-9"><a
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href="https://github.com/Topp-Roots-Lab/3d-root-crown-analysis-pipeline"
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class="image fit"><img src="images/toporoot-pipeline.png" alt="" /></a>
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</div>
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<div class="col-3">
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<h4>Gia3D</h4>
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<p>Root3D skeleton trait extraction[github]</p>
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</div>
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<div class="col-9"><a href="https://github.com/Topp-Roots-Lab/Gia3D"
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class="image fit"><img src="images/toporoot-pipeline.png" alt="" /></a>
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</div>
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<div class="col-3">
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<h4>Root timeseries analysis</h4>
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<p>R scripts to analyze and visualize root
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traits over time from DynamicRoots-generated files [github]</p>
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</div>
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<div class="col-9"><a
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href="https://github.com/Topp-Roots-Lab/timeseries_analysis"
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class="image fit"><img src="images/toporoot-pipeline.png" alt="" /></a>
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</div>
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</div>
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</div>
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</section>
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</div>
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</div>
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</div>
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</div>
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</div>
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<!-- Footer -->
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<div id="footer-wrapper">
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<footer id="footer" class="container">
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<div class="row">
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<div class="col-9 col-6-medium col-12-small">
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<!-- Links -->
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<section class="widget links">
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<h3>Site map</h3>
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<ul class="style2">
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<li><a href="index.html">Home</a></li>
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<li><a href="research.html">Research</a></li>
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<li><a href="publications.html">Publications</a></li>
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<li><a href="tools.html">Tools & resources</a></li>
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<li><a href="lab.html">Lab members</a></li>
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<li><a href="https://www.google.com/maps/dir/?api=1&destination=38.674333,-90.3971893">Find
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us</a></li>
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<li><a href="join.html">Join us</a></li>
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</ul>
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</section>
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</div>
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<div class="col-3 col-6-medium col-12-small">
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<!-- Contact -->
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<section class="widget contact last">
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<h3>Contact</h3>
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<ul>
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<li><a href="https://twitter.com/RootDevo" class=" icon brands fa-twitter"><span
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class="label">Twitter</span></a></li>
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<li><a href="mailto:CTopp@danforthcenter.org" class="icon brands fa-telegram"><span
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class="label">Email</span></a></li>
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<li><a href="https://www.google.com/maps/dir/?api=1&destination=38.674333,-90.3971893"
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class="icon brands fa-safari"><span class="label">Address</span></a></li>
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<li><a href="https://scholar.google.com/citations?user=-L6lz1IAAAAJ"
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class="icon brands fa-google"><span class="label">Google scholar</span></a></li>
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<li><a href="https://github.com/Topp-Roots-Lab/marcusdgriff.github.io"
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class="icon brands fa-github"><span class="label">Github</span></a></li>
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</ul>
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</section>
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</div>
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</div>
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<div class="row">
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<div class="col-12">
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<div id="copyright">
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<ul class="menu">
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<li>&copy; Christopher Topp [All rights reserved]</li>
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<li>designed using Bootstrap 4.0</li>
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<li>hosted on <i class="fab fa-github"></i></li>
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<li>Source code available <a
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href="https://github.com/Topp-Roots-Lab/marcusdgriff.github.io">here</a></li>
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<li>and maintained by the lab</li>
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<li>Design: <a href="https://html5up.net">HTML5 UP</a></li>
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</ul>
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</div>
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</div>
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</div>
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</footer>
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</div>
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</div>
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<!-- Scripts -->
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<script src="assets/js/jquery.min.js"></script>
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<script src="assets/js/jquery.dropotron.min.js"></script>
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<script src="assets/js/browser.min.js"></script>
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<script src="assets/js/breakpoints.min.js"></script>
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<script src="assets/js/util.js"></script>
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<script src="assets/js/main.js"></script>
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</body>
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</html>

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