icWGCNA/_pkgdown.yml at main · Systems-Methods/icWGCNA · GitHub

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url: https://systems-methods.github.io/icWGCNA/

template:
  bootstrap: 5
  params:
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  includes:
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authors:
  Mike Mason:
    href: https://github.com/mjrmason
  Jimmy Fulp:
    href: https://github.com/wfulp
  Alexandre Alloy:
    href: https://github.com/alexandre-alloy

reference:
  - title: Main icWGCNA Function
    contents:
    - icwgcna
  - title: Downstream/Enrichment Functions
    desc: >
      Functions to run on icWGCNA results
    contents:
    - compute_panglaoDB_enrichment
    - compute_MSigDB_enrichment
    - compute_xCell_enrichment
    - compute_eigengene_matrix
    - make_network_umap
    - display_top_genes
    - find_unique_top_genes
    - map_eigengenes_on_seurat
  - title: Utility Functions
    contents:
    - expression_compression
    - eigenMapMatMult
    - RfastTOMdist
    - fastTOMwrapper
    - pangDB_link
    - prolif_names