single-performance/environment-py.yml at main · SingleRust/single-performance · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
name: scanpy
channels:
  - conda-forge
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=2_gnu
  - anndata=0.11.4=pyhd8ed1ab_0
  - arpack=3.9.1=nompi_hf03ea27_102
  - array-api-compat=1.11.2=pyh29332c3_0
  - asttokens=3.0.0=pyhd8ed1ab_1
  - aws-c-auth=0.9.0=h3318fae_10
  - aws-c-cal=0.9.1=h5e3027f_0
  - aws-c-common=0.12.3=hb9d3cd8_0
  - aws-c-compression=0.3.1=hafb2847_5
  - aws-c-event-stream=0.5.4=haaa725d_10
  - aws-c-http=0.10.1=hd7992d4_3
  - aws-c-io=0.19.1=h7b43961_3
  - aws-c-mqtt=0.13.0=h7b3935a_4
  - aws-c-s3=0.8.0=h365f71b_1
  - aws-c-sdkutils=0.2.4=hafb2847_0
  - aws-checksums=0.2.7=hafb2847_1
  - aws-crt-cpp=0.32.6=h96107e3_3
  - aws-sdk-cpp=1.11.510=hf282fd2_9
  - azure-core-cpp=1.14.0=h5cfcd09_0
  - azure-identity-cpp=1.10.0=h113e628_0
  - azure-storage-blobs-cpp=12.13.0=h3cf044e_1
  - azure-storage-common-cpp=12.8.0=h736e048_1
  - azure-storage-files-datalake-cpp=12.12.0=ha633028_1
  - bokeh=3.7.3=pyhd8ed1ab_0
  - brotli=1.1.0=hb9d3cd8_2
  - brotli-bin=1.1.0=hb9d3cd8_2
  - brotli-python=1.1.0=py312h2ec8cdc_2
  - bzip2=1.0.8=h4bc722e_7
  - c-ares=1.34.5=hb9d3cd8_0
  - ca-certificates=2025.1.31=hbd8a1cb_1
  - cached-property=1.5.2=hd8ed1ab_1
  - cached_property=1.5.2=pyha770c72_1
  - cffi=1.17.1=py312h06ac9bb_0
  - click=8.2.1=pyh707e725_0
  - cloudpickle=3.1.1=pyhd8ed1ab_0
  - colorama=0.4.6=pyhd8ed1ab_1
  - comm=0.2.2=pyhd8ed1ab_1
  - contourpy=1.3.2=py312h68727a3_0
  - cycler=0.12.1=pyhd8ed1ab_1
  - cytoolz=1.0.1=py312h66e93f0_0
  - dask=2025.5.1=pyhd8ed1ab_0
  - dask-core=2025.5.1=pyhd8ed1ab_0
  - debugpy=1.8.14=py312h2ec8cdc_0
  - decorator=5.2.1=pyhd8ed1ab_0
  - distributed=2025.5.1=pyhd8ed1ab_0
  - exceptiongroup=1.2.2=pyhd8ed1ab_1
  - executing=2.1.0=pyhd8ed1ab_1
  - fonttools=4.57.0=py312h178313f_0
  - freetype=2.13.3=ha770c72_1
  - fsspec=2025.5.1=pyhd8ed1ab_0
  - gflags=2.2.2=h5888daf_1005
  - glog=0.7.1=hbabe93e_0
  - glpk=5.0=h445213a_0
  - gmp=6.3.0=hac33072_2
  - h2=4.2.0=pyhd8ed1ab_0
  - h5py=3.13.0=nompi_py312hedeef09_100
  - hdf5=1.14.3=nompi_h2d575fe_109
  - hpack=4.1.0=pyhd8ed1ab_0
  - hyperframe=6.1.0=pyhd8ed1ab_0
  - igraph=0.10.15=he44f51b_1
  - importlib-metadata=8.6.1=pyha770c72_0
  - ipykernel=6.29.5=pyh3099207_0
  - ipython=9.1.0=pyhfb0248b_0
  - ipython_pygments_lexers=1.1.1=pyhd8ed1ab_0
  - jedi=0.19.2=pyhd8ed1ab_1
  - jinja2=3.1.6=pyhd8ed1ab_0
  - joblib=1.4.2=pyhd8ed1ab_1
  - jupyter_client=8.6.3=pyhd8ed1ab_1
  - jupyter_core=5.7.2=pyh31011fe_1
  - keyutils=1.6.1=h166bdaf_0
  - kiwisolver=1.4.8=py312h84d6215_0
  - krb5=1.21.3=h659f571_0
  - lcms2=2.17=h717163a_0
  - ld_impl_linux-64=2.43=h712a8e2_4
  - legacy-api-wrap=1.4.1=pyhd8ed1ab_0
  - leidenalg=0.10.2=py312h30efb56_0
  - lerc=4.0.0=h0aef613_1
  - libabseil=20250127.1=cxx17_hbbce691_0
  - libaec=1.1.3=h59595ed_0
  - libarrow=20.0.0=h9b1bdb9_4_cpu
  - libarrow-acero=20.0.0=hcb10f89_4_cpu
  - libarrow-dataset=20.0.0=hcb10f89_4_cpu
  - libarrow-substrait=20.0.0=h1bed206_4_cpu
  - libblas=3.9.0=31_h59b9bed_openblas
  - libbrotlicommon=1.1.0=hb9d3cd8_2
  - libbrotlidec=1.1.0=hb9d3cd8_2
  - libbrotlienc=1.1.0=hb9d3cd8_2
  - libcblas=3.9.0=31_he106b2a_openblas
  - libcrc32c=1.1.2=h9c3ff4c_0
  - libcurl=8.13.0=h332b0f4_0
  - libdeflate=1.23=h86f0d12_0
  - libedit=3.1.20250104=pl5321h7949ede_0
  - libev=4.33=hd590300_2
  - libevent=2.1.12=hf998b51_1
  - libexpat=2.7.0=h5888daf_0
  - libffi=3.4.6=h2dba641_1
  - libfreetype=2.13.3=ha770c72_1
  - libfreetype6=2.13.3=h48d6fc4_1
  - libgcc=14.2.0=h767d61c_2
  - libgcc-ng=14.2.0=h69a702a_2
  - libgfortran=14.2.0=h69a702a_2
  - libgfortran5=14.2.0=hf1ad2bd_2
  - libgomp=14.2.0=h767d61c_2
  - libgoogle-cloud=2.36.0=hc4361e1_1
  - libgoogle-cloud-storage=2.36.0=h0121fbd_1
  - libgrpc=1.71.0=h8e591d7_1
  - libhwloc=2.11.2=default_h0d58e46_1001
  - libiconv=1.18=h4ce23a2_1
  - libjpeg-turbo=3.1.0=hb9d3cd8_0
  - liblapack=3.9.0=31_h7ac8fdf_openblas
  - libleidenalg=0.11.1=h00ab1b0_0
  - liblzma=5.8.1=hb9d3cd8_0
  - libnghttp2=1.64.0=h161d5f1_0
  - libnsl=2.0.1=hd590300_0
  - libopenblas=0.3.29=pthreads_h94d23a6_0
  - libopentelemetry-cpp=1.20.0=hd1b1c89_0
  - libopentelemetry-cpp-headers=1.20.0=ha770c72_0
  - libparquet=20.0.0=h081d1f1_4_cpu
  - libpng=1.6.47=h943b412_0
  - libprotobuf=5.29.3=h501fc15_1
  - libre2-11=2024.07.02=hba17884_3
  - libsodium=1.0.20=h4ab18f5_0
  - libsqlite=3.49.1=hee588c1_2
  - libssh2=1.11.1=hf672d98_0
  - libstdcxx=14.2.0=h8f9b012_2
  - libstdcxx-ng=14.2.0=h4852527_2
  - libthrift=0.21.0=h0e7cc3e_0
  - libtiff=4.7.0=hd9ff511_4
  - libutf8proc=2.10.0=h202a827_0
  - libuuid=2.38.1=h0b41bf4_0
  - libwebp-base=1.5.0=h851e524_0
  - libxcb=1.17.0=h8a09558_0
  - libxcrypt=4.4.36=hd590300_1
  - libxml2=2.13.7=h81593ed_1
  - libzlib=1.3.1=hb9d3cd8_2
  - llvmlite=0.44.0=py312h374181b_1
  - locket=1.0.0=pyhd8ed1ab_0
  - lz4=4.4.4=py312hf0f0c11_0
  - lz4-c=1.10.0=h5888daf_1
  - markupsafe=3.0.2=py312h178313f_1
  - matplotlib-base=3.10.1=py312hd3ec401_0
  - matplotlib-inline=0.1.7=pyhd8ed1ab_1
  - msgpack-python=1.1.1=py312h68727a3_0
  - munkres=1.1.4=pyh9f0ad1d_0
  - narwhals=1.44.0=pyhe01879c_0
  - natsort=8.4.0=pyh29332c3_1
  - ncurses=6.5=h2d0b736_3
  - nest-asyncio=1.6.0=pyhd8ed1ab_1
  - networkx=3.4.2=pyh267e887_2
  - nlohmann_json=3.12.0=h3f2d84a_0
  - numba=0.61.2=py312h2e6246c_0
  - numpy=2.2.5=py312h72c5963_0
  - openjpeg=2.5.3=h5fbd93e_0
  - openssl=3.5.0=h7b32b05_0
  - orc=2.1.2=h17f744e_0
  - packaging=25.0=pyh29332c3_1
  - pandas=2.2.3=py312hf9745cd_3
  - parso=0.8.4=pyhd8ed1ab_1
  - partd=1.4.2=pyhd8ed1ab_0
  - patsy=1.0.1=pyhd8ed1ab_1
  - pexpect=4.9.0=pyhd8ed1ab_1
  - pickleshare=0.7.5=pyhd8ed1ab_1004
  - pillow=11.1.0=py312h80c1187_0
  - pip=25.0.1=pyh8b19718_0
  - platformdirs=4.3.7=pyh29332c3_0
  - prometheus-cpp=1.3.0=ha5d0236_0
  - prompt-toolkit=3.0.51=pyha770c72_0
  - psutil=7.0.0=py312h66e93f0_0
  - pthread-stubs=0.4=hb9d3cd8_1002
  - ptyprocess=0.7.0=pyhd8ed1ab_1
  - pure_eval=0.2.3=pyhd8ed1ab_1
  - pyarrow=20.0.0=py312h7900ff3_0
  - pyarrow-core=20.0.0=py312h01725c0_0_cpu
  - pycparser=2.22=pyh29332c3_1
  - pygments=2.19.1=pyhd8ed1ab_0
  - pynndescent=0.5.13=pyhd8ed1ab_1
  - pyparsing=3.2.3=pyhd8ed1ab_1
  - pysocks=1.7.1=pyha55dd90_7
  - python=3.12.10=h9e4cc4f_0_cpython
  - python-dateutil=2.9.0.post0=pyhff2d567_1
  - python-igraph=0.11.8=py312h3262465_0
  - python-tzdata=2025.2=pyhd8ed1ab_0
  - python_abi=3.12=7_cp312
  - pytz=2025.2=pyhd8ed1ab_0
  - pyyaml=6.0.2=py312h178313f_2
  - pyzmq=26.4.0=py312hbf22597_0
  - qhull=2020.2=h434a139_5
  - re2=2024.07.02=h9925aae_3
  - readline=8.2=h8c095d6_2
  - s2n=1.5.21=h7ab7c64_0
  - scanpy=1.11.1=pyhd8ed1ab_0
  - scikit-learn=1.5.2=py312h7a48858_1
  - scipy=1.15.2=py312ha707e6e_0
  - seaborn=0.13.2=hd8ed1ab_3
  - seaborn-base=0.13.2=pyhd8ed1ab_3
  - session-info2=0.1.2=pyhd8ed1ab_0
  - setuptools=79.0.0=pyhff2d567_0
  - six=1.17.0=pyhd8ed1ab_0
  - snappy=1.2.1=h8bd8927_1
  - sortedcontainers=2.4.0=pyhd8ed1ab_1
  - stack_data=0.6.3=pyhd8ed1ab_1
  - statsmodels=0.14.4=py312hc0a28a1_0
  - tbb=2022.1.0=h4ce085d_0
  - tblib=3.1.0=pyhd8ed1ab_0
  - texttable=1.7.0=pyhd8ed1ab_1
  - threadpoolctl=3.6.0=pyhecae5ae_0
  - tk=8.6.13=noxft_h4845f30_101
  - toolz=1.0.0=pyhd8ed1ab_1
  - tornado=6.4.2=py312h66e93f0_0
  - tqdm=4.67.1=pyhd8ed1ab_1
  - traitlets=5.14.3=pyhd8ed1ab_1
  - typing-extensions=4.13.2=h0e9735f_0
  - typing_extensions=4.13.2=pyh29332c3_0
  - tzdata=2025b=h78e105d_0
  - umap-learn=0.5.7=py312h7900ff3_1
  - unicodedata2=16.0.0=py312h66e93f0_0
  - urllib3=2.5.0=pyhd8ed1ab_0
  - wcwidth=0.2.13=pyhd8ed1ab_1
  - wheel=0.45.1=pyhd8ed1ab_1
  - xorg-libxau=1.0.12=hb9d3cd8_0
  - xorg-libxdmcp=1.1.5=hb9d3cd8_0
  - xyzservices=2025.4.0=pyhd8ed1ab_0
  - yaml=0.2.5=h7f98852_2
  - zeromq=4.3.5=h3b0a872_7
  - zict=3.0.0=pyhd8ed1ab_1
  - zipp=3.21.0=pyhd8ed1ab_1
  - zlib=1.3.1=hb9d3cd8_2
  - zstandard=0.23.0=py312h66e93f0_2
  - zstd=1.5.7=hb8e6e7a_2
  - pip:
    - cellxgene-census==1.17.0
    - kaleido==1.0.0
    - louvain==0.8.2
    - matplotlib-venn==1.1.2
    - plotly==6.2.0

prefix: "/local/ian/MAMBA/envs/scanpy"