Merge dev changes#25

Merged

DonFreed merged 22 commits into

mainfrom

May 4, 2026

Commits on Apr 19, 2026

Commits on Apr 20, 2026

Automatically push container images to DockerHub
DonFreed
committed

Commits on Apr 22, 2026

Add handling of difficult segdups
DonFreed
committed

Commits on Apr 23, 2026

Add STR calling to the pangenome pipeline
DonFreed
committed

Commits on Apr 28, 2026

Enable SV calling without a `cnv.model` file
DonFreed
committed

Commits on Apr 29, 2026

Add HLA/KIR calling with t1k
DonFreed
committed

Commits on Apr 30, 2026

Add new external tools to the Dockerfile
DonFreed
committed

Commits on May 3, 2026

Restructure bam-input pipeline in `dnascope-pangenome`
DonFreed
committed