Intermittent `ModuleNotFoundError: No module named 'cache'` when running workflows

[ntalluri]

I'm hitting an error when running the benchmarking workflow on both dataset-depmap and egfr-and-infrastructure branches. The error appears randomly, and the only reliable fix I've found is deleting .venv and/or cache/artifacts before re-running.

Error

ModuleNotFoundError in file "../../cache/Snakefile", line 7:
No module named 'cache'
  File "/Users/nehatalluri/Desktop/spras-benchmarking/datasets/depmap/../../cache/Snakefile", line 7, in <module>

Not consistently reproducible. It occurs while running a dataset workflow with no clear trigger.

Possible contributing factors

• I'm running on macOS
• I'm actively editing workflow files during runs, which may leave the workflow in an inconsistent state that the cache can't recover from

[ntalluri]

uv sync doesn't help resolve any issues when this error appears.