RMS error after commit 437739

[alirmg]

I have just pulled the most recent RMG-Py and RMG-Database from git. when I run the superminimal example, I get the following error (full text below). (for both superminimal example and any other input files I generated) NameError: name 'rms' is not defined

[mjohnson541]

The environment has been updated. You need to reinstall see: http://reactionmechanismgenerator.github.io/RMG-Py/users/rmg/installation/anacondaDeveloper.html

[IannLiu]

The environment has been updated. You need to reinstall see: http://reactionmechanismgenerator.github.io/RMG-Py/users/rmg/installation/anacondaDeveloper.html

Hi, I got the same error after running the superminimal example. However, another error,
AttributeError: module 'julia.ReactionMechanismSimulator' has no attribute 'EmptyHenryLawConstant' occurred after installing and linking Julia dependencies.

[mjohnson541]

Okay, in the environment run julia to open julia and then run

] add ReactionMechanismSimulator#main

The ] will disappear after you type it.

[xiaoruiDong]

@ChrisBNEU Hi Chris, I remembered you brought up this (or something similar) during the developer hour this week (Apr 4, 2022). Can you update here with what you found and what troubleshooting you have done? If there is a PR related please link it as well. Many thanks!

[ChrisBNEU]

So far, the problem appears to be that the ReactionMechanismSimulator package in julia does not update with the main branch of the RMS github repo, despite it being specified in the pyrms wrapper. Have not started a PR, the farthest I have gotten with it is it is we could solve it in the install step for julia:

julia -e 'using Pkg; Pkg.add(PackageSpec(name="ReactionMechanismSimulator",version="0.4")); ...'

I think we can specify this instead:

julia -e 'using Pkg; Pkg.add(PackageSpec(name="ReactionMechanismSimulator",rev="main")); ...'

although we should not need to do this, again since the repo is specified in pyrms. I have not gotten to the root cause of that yet.

[Pegah-B]

Hi, I have the similar issue on my mac 10.14.6 after installing the latest version of RMG (3.1.0) by pulling the most recent RMG-Py and RMG-Database from git. just according to the updated instruction as mentioned in "#2290 (comment)".
Running the minimal example of Ethane pyrolysis or any other input result in the error "NameError: name 'rms' is not defined". How should I fix the error?

[mjohnson541]

1. If inside the rmg_env you run conda list and pyrms isn't in the dependencies you need to rebuild the rmg_env environment, there are faster ways to do this than entirely reinstalling, but entirely reinstalling is probably the easiest and least prone to error.
2. You should be launching RMG with python-jl now rather than python.
3. If the issue is none of the above activate the RMG environment and run:
   julia -e 'using Pkg; Pkg.add(PackageSpec(name="ReactionMechanismSimulator",rev="main"));

[Pegah-B]

1- What I see in the list at the moment is:
pyrms 0.1.2 no_rmg_dep rmg
I did entirely reinstall it on the weekend and I still got the same error NameError: name 'rms' is not defined afterwards.
2- I already used python-jl.
3- I've just done it, but the same error still pops up for me.

[mjohnson541]

Run
python-jl -c "from pyrms import rms"
and post the error trace you get.