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lines changed Original file line number Diff line number Diff line change @@ -19,15 +19,15 @@ def DSPC_custom_XY():
1919 We can define our lipid in terms of an Area per Molecule, almost in its entirety, if we recognise that where the
2020 volume is known, the thickness of the layer is simply given by the layer volume / APM:
2121
22- $ d_{\t extrm{layer}} =\f rac{V_{\t extrm{layer}} }{{\t extrm{APM}}_{\t extrm{layer}}}$ .
22+ .. math:: d_{\t extrm{layer}} =\f rac{V_{\t extrm{layer}} }{{\t extrm{APM}}_{\t extrm{layer}}}.
2323
2424 We can then define the Volume Fraction of this layer with a roughened Heaviside of length dlayer and a height of 1.
2525 Then, the total volume occupied will be given by the sum of the volume fractions across the interface. Of course,
2626 this does not permit any hydration, so to deal with this, we can simply scale the (full occupation) Heaviside
2727 functions by relevant coverage parameters. When this is correctly done, we can obtain the remaining water
2828 distribution as:
2929
30- $$ {\t extrm{VF}}_{\t extrm{wat}} =1-\\ sum_n {\t extrm{VF}}_n$$
30+ .. math:: {\t extrm{VF}}_{\t extrm{wat}} =1-\\ sum_n {\t extrm{VF}}_n
3131
3232 where VFn is the Volume Fraction of the n'th layer.
3333 """
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