Regenerated with latest nml libs

pgleeson · pgleeson · commit 2135ba63b94b · 2025-04-11T12:13:39.000+01:00
diff --git a/NetPyNE/ACnet/AMPA_syn.mod b/NetPyNE/ACnet/AMPA_syn.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=AMPA_syn type=expTwoSynapse)
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/ACnet/AMPA_syn_inh.mod b/NetPyNE/ACnet/AMPA_syn_inh.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=AMPA_syn_inh type=expTwoSynapse)
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/ACnet/BackgroundRandomIClamps.mod b/NetPyNE/ACnet/BackgroundRandomIClamps.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=BackgroundRandomIClamps type=pulseGen
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/ACnet/Ca_conc.mod b/NetPyNE/ACnet/Ca_conc.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=Ca_conc type=fixedFactorConcentration
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/ACnet/Ca_pyr.mod b/NetPyNE/ACnet/Ca_pyr.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=Ca_pyr type=ionChannelHH)
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/ACnet/GABA_syn.mod b/NetPyNE/ACnet/GABA_syn.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=GABA_syn type=expTwoSynapse)
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/ACnet/GABA_syn_inh.mod b/NetPyNE/ACnet/GABA_syn_inh.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=GABA_syn_inh type=expTwoSynapse)
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/ACnet/Kahp_pyr.mod b/NetPyNE/ACnet/Kahp_pyr.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=Kahp_pyr type=ionChannelHH)
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/ACnet/Kdr_bask.mod b/NetPyNE/ACnet/Kdr_bask.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=Kdr_bask type=ionChannelHH)
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/ACnet/Kdr_pyr.mod b/NetPyNE/ACnet/Kdr_pyr.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=Kdr_pyr type=ionChannelHH)
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/ACnet/LEMS_MediumNet_netpyne.py b/NetPyNE/ACnet/LEMS_MediumNet_netpyne.py
@@ -37,9 +37,9 @@
 
 
     This NETPYNE file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 '''
 # Main NetPyNE script for: network_ACnet2
@@ -69,7 +69,7 @@ def __init__(self, tstop=500.0, dt=0.01, seed=123456789, save_json=False, abs_to
         self.report_file.write('SimulationFile=%s\n'%__file__)
         self.report_file.write('PythonVersion=%s\n'%sys.version.replace('\n',' '))
         self.report_file.write('NeuronVersion=%s\n'%h.nrnversion())
-        self.report_file.write('NeuroMLExportVersion=1.10.1\n')
+        self.report_file.write('NeuroMLExportVersion=1.11.0\n')
         self.report_file.close()
         
 
diff --git a/NetPyNE/ACnet/LeakConductance_bask.mod b/NetPyNE/ACnet/LeakConductance_bask.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=LeakConductance_bask type=ionChannelP
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/ACnet/LeakConductance_pyr.mod b/NetPyNE/ACnet/LeakConductance_pyr.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=LeakConductance_pyr type=ionChannelPa
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/ACnet/Na_bask.mod b/NetPyNE/ACnet/Na_bask.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=Na_bask type=ionChannelHH)
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/ACnet/Na_pyr.mod b/NetPyNE/ACnet/Na_pyr.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=Na_pyr type=ionChannelHH)
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/GapJunctions/LEMS_GJ_netpyne.py b/NetPyNE/GapJunctions/LEMS_GJ_netpyne.py
@@ -11,9 +11,9 @@
 
 
     This NETPYNE file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 '''
 # Main NetPyNE script for: net1
@@ -43,7 +43,7 @@ def __init__(self, tstop=700.0, dt=0.01, seed=123456789, save_json=False, abs_to
         self.report_file.write('SimulationFile=%s\n'%__file__)
         self.report_file.write('PythonVersion=%s\n'%sys.version.replace('\n',' '))
         self.report_file.write('NeuronVersion=%s\n'%h.nrnversion())
-        self.report_file.write('NeuroMLExportVersion=1.10.1\n')
+        self.report_file.write('NeuroMLExportVersion=1.11.0\n')
         self.report_file.close()
         
 
diff --git a/NetPyNE/GapJunctions/gj1.mod b/NetPyNE/GapJunctions/gj1.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=gj1 type=gapJunction)
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/GapJunctions/iaf.mod b/NetPyNE/GapJunctions/iaf.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=iaf type=iafCell)
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/GapJunctions/pulseGen1.mod b/NetPyNE/GapJunctions/pulseGen1.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=pulseGen1 type=pulseGenerator)
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/GapJunctions/pulseGen2.mod b/NetPyNE/GapJunctions/pulseGen2.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=pulseGen2 type=pulseGenerator)
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/LEMS_2007One_netpyne.py b/NetPyNE/LEMS_2007One_netpyne.py
@@ -9,9 +9,9 @@
 
 
     This NETPYNE file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 '''
 # Main NetPyNE script for: net1
diff --git a/NetPyNE/RS.mod b/NetPyNE/RS.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=RS type=izhikevich2007Cell)
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/RS_Iext.mod b/NetPyNE/RS_Iext.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=RS_Iext type=pulseGenerator)
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/TwoCells/Ca_conc.mod b/NetPyNE/TwoCells/Ca_conc.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=Ca_conc type=fixedFactorConcentration
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/TwoCells/Ca_pyr.mod b/NetPyNE/TwoCells/Ca_pyr.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=Ca_pyr type=ionChannelHH)
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/TwoCells/Input_0.mod b/NetPyNE/TwoCells/Input_0.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=Input_0 type=pulseGenerator)
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/TwoCells/Input_1.mod b/NetPyNE/TwoCells/Input_1.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=Input_1 type=pulseGenerator)
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/TwoCells/Kahp_pyr.mod b/NetPyNE/TwoCells/Kahp_pyr.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=Kahp_pyr type=ionChannelHH)
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/TwoCells/Kdr_bask.mod b/NetPyNE/TwoCells/Kdr_bask.mod
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=Kdr_bask type=ionChannelHH)
 COMMENT
 
     This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
-         org.neuroml.export  v1.10.1
-         org.neuroml.model   v1.10.1
-         jLEMS               v0.11.1
+         org.neuroml.export  v1.11.0
+         org.neuroml.model   v1.11.0
+         jLEMS               v0.12.0
 
 ENDCOMMENT
 
diff --git a/NetPyNE/TwoCells/Kdr_pyr.mod b/NetPyNE/TwoCells/Kdr_pyr.mod
diff --git a/NetPyNE/TwoCells/LEMS_TwoCell_netpyne.py b/NetPyNE/TwoCells/LEMS_TwoCell_netpyne.py
diff --git a/NetPyNE/TwoCells/LeakConductance_bask.mod b/NetPyNE/TwoCells/LeakConductance_bask.mod
diff --git a/NetPyNE/TwoCells/LeakConductance_pyr.mod b/NetPyNE/TwoCells/LeakConductance_pyr.mod
diff --git a/NetPyNE/TwoCells/Na_bask.mod b/NetPyNE/TwoCells/Na_bask.mod
diff --git a/NetPyNE/TwoCells/Na_pyr.mod b/NetPyNE/TwoCells/Na_pyr.mod
diff --git a/NetPyNE/UI/LEMS_HHSimple_netpyne.py b/NetPyNE/UI/LEMS_HHSimple_netpyne.py
diff --git a/NetPyNE/UI/output_data.json b/NetPyNE/UI/output_data.json
diff --git a/NeuroML2/LEMS_HHSmall.xml b/NeuroML2/LEMS_HHSmall.xml
diff --git a/NeuroML2/LEMS_HybridSmall.xml b/NeuroML2/LEMS_HybridSmall.xml
diff --git a/NeuroML2/LEMS_HybridTut.xml b/NeuroML2/LEMS_HybridTut.xml
diff --git a/NeuroML2/LEMS_M1.xml b/NeuroML2/LEMS_M1.xml
diff --git a/NeuroML2/M1.net.nml b/NeuroML2/M1.net.nml
