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| 1 | +# CLAUDE.md |
| 2 | + |
| 3 | +This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository. |
| 4 | + |
| 5 | +## Project Purpose |
| 6 | + |
| 7 | +This is a **documentation-only repository** for the LARA (Lab Automation Research Architecture) tutorial, built with MkDocs Material. It documents the PythonLab component — a Python-based language for defining laboratory automation workflows. There is no application source code to run or test. |
| 8 | + |
| 9 | +## Commands |
| 10 | + |
| 11 | +**Package manager:** `uv` (not pip directly) |
| 12 | + |
| 13 | +```bash |
| 14 | +# Serve docs locally with live reload |
| 15 | +make serve |
| 16 | +# or equivalently: |
| 17 | +mkdocs serve --livereload |
| 18 | + |
| 19 | +# Regenerate API reference docs from the pythonlab package |
| 20 | +python generate_docs.py |
| 21 | + |
| 22 | +# Install dependencies |
| 23 | +uv sync |
| 24 | + |
| 25 | +# Deploy to GitHub Pages (CI does this automatically on push to main) |
| 26 | +mkdocs gh-deploy --force |
| 27 | +``` |
| 28 | + |
| 29 | +## Architecture |
| 30 | + |
| 31 | +### Documentation Structure (`docs/`) |
| 32 | + |
| 33 | +- `index.md` — Landing page with LARA system architecture overview |
| 34 | +- `quickstart.md` — Docker + Python setup guide for users |
| 35 | +- `customization.md` — Guide for adapting LARA to a custom lab |
| 36 | +- `pythonlab/` — PythonLab framework deep-dives (introduction, processes, API reference) |
| 37 | +- `wrappers.md` — Device wrapper interface (SiLA2 standard) |
| 38 | +- `assets/` — SVG logos and PNG screenshots |
| 39 | + |
| 40 | +### Auto-generated API Docs |
| 41 | + |
| 42 | +`generate_docs.py` introspects the installed `pythonlab` package (installed from the OSLA GitLab PyPI source) and uses `templates/api_reference.md.jinja2` to generate `docs/pythonlab/api_reference.md`. Run this script when the `pythonlab` package is updated to refresh the API reference. |
| 43 | + |
| 44 | +### Key Concepts in the Docs |
| 45 | + |
| 46 | +- **PythonLab language**: Python functions decorated as processes, converted to DAGs for scheduling |
| 47 | +- **Resources**: Services (devices), Labware, Substances, Data — the four resource types |
| 48 | +- **SiLA2**: The underlying device communication protocol |
| 49 | +- **Orchestrator**: Schedules and executes process DAGs across lab devices |
| 50 | + |
| 51 | +### MkDocs Configuration (`mkdocs.yml`) |
| 52 | + |
| 53 | +Uses Material theme with: mermaid diagrams (mkdocs-mermaid2-plugin), image lightbox (mkdocs-glightbox), pan/zoom (mkdocs-panzoom-plugin), and mkdocstrings for API reference rendering. |
| 54 | + |
| 55 | +### CI/CD |
| 56 | + |
| 57 | +GitHub Actions (`.github/workflows/main.yml`) deploys to GitHub Pages on every push to `main` via `mkdocs gh-deploy --force`. |
| 58 | + |
| 59 | +### Software packages |
| 60 | +This documentation describes the usage of the LARA lab automation toolkit, which consists of the following software packages: |
| 61 | + |
| 62 | +| Package | PyPI | GitLab Repository | |
| 63 | +|---------|------|-------------------| |
| 64 | +| PythonLab | [uuPythonlab](https://pypi.org/project/uuPythonlab/) | [pythonLab](https://gitlab.com/OpenLabAutomation/lab-automation-packages/pythonLab) | |
| 65 | +| Lab Orchestrator | [uulaborchestrator](https://pypi.org/project/uulaborchestrator/) | [laborchestrator](https://gitlab.com/OpenLabAutomation/lab-automation-packages/laborchestrator) | |
| 66 | +| Lab Scheduler | [uulabscheduler](https://pypi.org/project/uulabscheduler/) | [lab-scheduler](https://gitlab.com/OpenLabAutomation/lab-automation-packages/lab-scheduler) | |
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